CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g74500

Gene name bHLH family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.89 94.6 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P S.X. H.G.
0.67 81.6 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV S.X. H.G.
0.30 32.1 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
123.9 99.9 GSM133991 Birnbaum_1-24_gl2-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
121.1 99.9 GSM184840 Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
107.3 99.9 GSM133989 Birnbaum_1-22_gl2-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
97.3 99.9 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
92.8 99.9 GSM184839 Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
86.5 99.9 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
77.4 99.9 GSM184890 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
70.5 99.9 GSM184842 Arabidopsis, root, longitudinal zone 2, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
68.7 99.9 GSM184831 Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
68.6 99.9 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 2e-3 42 At5g15160 831368 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;P C.G. S.X.
0.25 2e-3 42 At1g26945 839585 KDR (KIDARI) Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity. C.G. S.X.
0.23 9e-3 40 At3g28857 2745895 transcription regulator F:transcription regulator activity;P:regulation of transcription;C:nucleus;P C.G. S.X.
0.15 1e-1 36 At3g47710 823925 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P C.G. S.X.
0.02 1e-1 36 At1g10330 837572 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.01 5e-1 34 At3g14790 820707 RHM3 (RHAMNOSE BIOSYNTHESIS 3) F:UDP-L-rhamnose synthase activity, catalytic activity;P:UDP-rhamnose biosynthetic process, nucleotide-sugar metabolic process;C:soluble fraction;OBMPAFV C.G. S.X.
0.01 5e-1 34 At2g22560 816788 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.01 2e+0 32 At5g04460 830324 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.03 2e+0 32 At5g52260 835302 AtMYB19 (myb domain protein 19) Member of the R2R3 factor gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-9 61 Glycine max GmaAffx.59772.1.S1_at AW311156 - - 5e-16 At1g26945 KDR (KIDARI) C.G. S.X.
0.04 4e+0 30 Hordeum vulgare HW01N13u_at HW01N13u - - 4e+0 At3g03840 auxin-responsive protein, putative C.G. S.X.
0.03 4e+0 32 Oryza sativa Os.53249.1.S1_at - - - 0 C.G. S.X.
0.11 3e-3 42 Populus trichocarpa PtpAffx.17706.1.A1_at CV275964 hypothetical protein - 6e-3 At1g74500 bHLH family protein C.G. S.X.
0.05 2e+0 32 Triticum aestivum Ta.4627.2.S1_at BJ268985 - - 1e+0 At1g47580 lipoyltransferase, putative C.G. S.X.
0.09 2e-1 34 Vitis vinifera 1613614_at CB975388 hypothetical protein LOC100252480 - 3e-16 At1g26945 KDR (KIDARI) C.G. S.X.
0.06 4e-3 40 Zea mays Zm.6280.1.A1_at AI691240 hypothetical protein LOC100276409 - 1e-2 At1g74500 bHLH family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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