CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g74480

Gene name RWP-RK domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.66 80.1 At1g74480 843789 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFM S.X. H.G.
0.69 82.9 At1g32390 840132 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.65 79.6 At1g65120 842819 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV S.X. H.G.
0.63 78.1 At5g16430 831504 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At2g22070 816742 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.60 75.7 At5g37640 833742 UBQ9 polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements. S.X. H.G.
0.60 75.7 At5g03980 830277 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBMO S.X. H.G.
0.59 74.7 At5g38500 833838 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB S.X. H.G.
0.58 73.8 At1g65210 842828 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.58 73.8 At2g24000 816934 scpl22 (serine carboxypeptidase-like 22) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
373.2 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
362.7 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
348.2 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
319.5 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
318.3 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
314.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
251.4 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
234.6 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
233.6 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
218.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 4e-32 139 At1g18790 838461 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB C.G. S.X.
0.11 3e-5 50 At5g66990 836834 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 3e-2 40 At2g27170 817259 TTN7 (TITAN7) cohesin C.G. S.X.
0.01 3e-2 40 At2g18540 816369 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOBFPVA C.G. S.X.
0.04 1e-1 38 At5g64350 836556 FKBP12 (FK506-BINDING PROTEIN) F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOFPA C.G. S.X.
0.02 1e-1 38 At4g01883 3770374 - F:unknown;P:unknown;C:chloroplast;BOP C.G. S.X.
0.02 1e-1 38 At4g39370 830092 UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27) Encodes a ubiquitin-specific protease. C.G. S.X.
0.01 1e-1 38 At4g02650 828212 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;MOPFBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max GmaAffx.82642.4.S1_s_at BI974036 abscisic acid 8'-hydroxylase - 9e-10 At4g19230 CYP707A1 C.G. S.X.
0.03 8e-1 34 Hordeum vulgare HW05E10u_at HW05E10u - - 3e+0 At1g62850 - C.G. S.X.
0.03 9e-1 36 Oryza sativa OsAffx.547.1.S1_at - - - 0 C.G. S.X.
0.05 6e-1 36 Populus trichocarpa PtpAffx.212575.1.S1_at pmrna24635 hypothetical protein - 2e-6 At5g53040 RWP-RK domain-containing protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.7892.1.A1_a_at BJ312151 - - 4e+0 At3g01331 - C.G. S.X.
0.02 5e-1 34 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.02 8e-1 34 Zea mays Zm.13777.1.A1_at CK347797 - - 8e-8 At1g27435 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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