CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g74470

Gene name geranylgeranyl reductase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.78 88.6 At1g74470 843788 geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate. S.X. H.G.
0.92 96.0 At4g02770 828183 PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) S.X. H.G.
0.91 95.6 At3g54890 824654 LHCA1 Encodes a component of the light harvesting complex associated with photosystem I. S.X. H.G.
0.91 95.6 At5g66570 836789 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type. S.X. H.G.
0.90 95.1 At1g06680 837178 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. S.X. H.G.
0.90 95.1 At1g30380 839918 PSAK (photosystem I subunit K) Encodes subunit K of photosystem I reaction center. S.X. H.G.
0.90 95.1 At4g38970 830052 fructose-bisphosphate aldolase, putative Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.89 94.6 At5g46110 834652 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator S.X. H.G.
0.88 94.0 At4g12800 826892 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. S.X. H.G.
0.88 94.0 At1g08380 837358 PSAO (photosystem I subunit O) Encodes subunit O of photosystem I. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.3 E-ATMX-35-raw-cel-1574334928
4.6 97.9 E-ATMX-20-raw-cel-1380188896
4.5 97.8 E-ATMX-20-raw-cel-1380188935
4.4 97.8 E-ATMX-35-raw-cel-1574334912
4.3 97.7 GSM318332 ML_35DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
4.0 97.5 E-ATMX-35-raw-cel-1574334896
4.0 97.5 GSM272986 WT Col, biological rep2 GSE10812 Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
4.0 97.5 GSM142814 SS002_ATH1_A6-smith-12h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
4.0 97.5 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
3.9 97.4 E-ATMX-20-raw-cel-1380188967
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At3g28880 822522 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 2e-1 38 At3g24200 822006 FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen F:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPA C.G. S.X.
0.02 2e-1 38 At2g02590 814789 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BAOP C.G. S.X.
0.01 2e-1 38 At2g31660 817722 SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling. Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport. Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity. SAD2 was ubiquitously expressed at low levels in all tissues except flowers. SAD2 expression was not induced by ABA or stress. Loss of function mutations in SAD2 exhibit increased tolerance for UV stress, increased production of UV protective secondary metabolites and suppression of nuclear localization of MYB4 (a repressor of UV stress response genes). C.G. S.X.
0.01 2e-1 38 At1g29200 839795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 7e-1 36 At5g37810 833759 NIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 6e-36 153 Glycine max Gma.1279.1.S1_a_at CD409598 - - 5e-36 At1g74470 geranylgeranyl reductase C.G. S.X.
0.08 1e-6 54 Hordeum vulgare Contig3183_s_at Contig3183 - - 4e-6 At1g74470 geranylgeranyl reductase C.G. S.X.
0.09 2e-9 65 Oryza sativa Os.55791.1.S1_at - - - 0 C.G. S.X.
0.41 1e-43 178 Populus trichocarpa PtpAffx.210506.1.S1_at pmrna20610 hypothetical protein - 1e-43 At1g74470 geranylgeranyl reductase C.G. S.X.
0.09 3e-6 54 Triticum aestivum Ta.1364.1.S1_at BJ219908 geranylgeranyl hydrogenase - 4e-6 At1g74470 geranylgeranyl reductase C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1618945_at CF214077 hypothetical protein LOC100253697 - 1e-25 At4g35260 IDH1 (ISOCITRATE DEHYDROGENASE 1) C.G. S.X.
0.10 2e-5 50 Zea mays Zm.3702.1.S1_at AY104414.1 geranylgeranyl hydrogenase - 6e-5 At1g74470 geranylgeranyl reductase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015995 The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00046 Isoprenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00900 Terpenoid backbone biosynthesis
01100 Metabolic pathways
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