Gene omics information

Query gene ID At1g74470
Gene name geranylgeranyl reductase
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7888.6At1g74470843788geranylgeranyl reductaseEncodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.S.X.H.G.
0.9296.0At4g02770828183PSAD-1 (photosystem I subunit D-1)Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1)S.X.H.G.
0.9195.6At3g54890824654LHCA1Encodes a component of the light harvesting complex associated with photosystem I.S.X.H.G.
0.9195.6At5g66570836789PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type.S.X.H.G.
0.9095.1At1g06680837178PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.S.X.H.G.
0.9095.1At1g30380839918PSAK (photosystem I subunit K)Encodes subunit K of photosystem I reaction center.S.X.H.G.
0.9095.1At4g38970830052fructose-bisphosphate aldolase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.S.X.H.G.
0.8994.6At5g46110834652APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)mutant has Altered acclimation responses; Chloroplast Triose Phosphate TranslocatorS.X.H.G.
0.8894.0At4g12800826892PSAL (photosystem I subunit L)Encodes subunit L of photosystem I reaction center.S.X.H.G.
0.8894.0At1g08380837358PSAO (photosystem I subunit O)Encodes subunit O of photosystem I.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.397.7GSM318332ML_35DAS_1GSE12676Arabidopsis thaliana Ler developmental series
4.097.5GSM272986WT Col, biological rep2GSE10812Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
4.097.5GSM142814SS002_ATH1_A6-smith-12hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycle
4.097.5GSM38668NSNPGSE2268Arabidopsis polysome microarray
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At3g28880822522protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.012e-138At3g24200822006FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygenF:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPAC.G.S.X.
0.022e-138At2g02590814789-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BAOPC.G.S.X.
0.012e-138At2g31660817722SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling. Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport. Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity. SAD2 was ubiquitously expressed at low levels in all tissues except flowers. SAD2 expression was not induced by ABA or stress. Loss of function mutations in SAD2 exhibit increased tolerance for UV stress, increased production of UV protective secondary metabolites and suppression of nuclear localization of MYB4 (a repressor of UV stress response genes).C.G.S.X.
0.012e-138At1g29200839795unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.027e-136At5g37810833759NIP4F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.426e-36153Glycine maxGma.1279.1.S1_a_atCD409598--5e-36At1g74470geranylgeranyl reductaseC.G.S.X.
0.081e-654Hordeum vulgareContig3183_s_atContig3183--4e-6At1g74470geranylgeranyl reductaseC.G.S.X.
0.092e-965Oryza sativaOs.55791.1.S1_at---0C.G.S.X.
0.411e-43178Populus trichocarpaPtpAffx.210506.1.S1_atpmrna20610hypothetical protein-1e-43At1g74470geranylgeranyl reductaseC.G.S.X.
0.093e-654Triticum aestivumTa.1364.1.S1_atBJ219908geranylgeranyl hydrogenase-4e-6At1g74470geranylgeranyl reductaseC.G.S.X.
0.028e-134Vitis vinifera1618945_atCF214077hypothetical protein LOC100253697-1e-25At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)C.G.S.X.
0.102e-550Zea maysZm.3702.1.S1_atAY104414.1geranylgeranyl hydrogenase-6e-5At1g74470geranylgeranyl reductaseC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0015995The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00046Link to KaPPA-View 4Isoprenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00900Link to KEGG PATHWAYTerpenoid backbone biosynthesis
01100Link to KEGG PATHWAYMetabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage