CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g74220

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g74220 843762 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBV S.X. H.G.
0.51 66.3 At1g06540 837165 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.48 62.5 At5g55980 835696 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.46 59.8 At5g20690 832192 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.40 50.8 At1g49490 841373 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPOFVA S.X. H.G.
0.40 50.8 At1g33770 840268 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.38 46.7 At1g77730 844109 pleckstrin homology (PH) domain-containing protein F:phosphoinositide binding;P:signal transduction;C:chloroplast;MFPO S.X. H.G.
0.37 45.0 At5g25430 832617 anion exchanger F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV S.X. H.G.
0.34 39.8 At3g13660 820570 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cellular_component unknown;P S.X. H.G.
0.34 39.8 At4g26930 828800 MYB97 (myb domain protein 97) Encodes a putative transcription factor (MYB97). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
302.4 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
228.4 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
196.6 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
180.6 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
177.8 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
176.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
172.3 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
169.8 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
169.3 100.0 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
167.2 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-4 48 At5g15430 831395 calmodulin-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.02 5e-4 46 At5g44280 834451 RING1A (RING 1A) Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. C.G. S.X.
0.02 5e-4 46 At4g11560 826760 bromo-adjacent homology (BAH) domain-containing protein F:DNA binding;P:transcription;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.02 2e-3 44 At4g16630 827364 DEAD/DEAH box helicase, putative (RH28) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.02 2e-3 44 At1g18950 838476 aminoacyl-tRNA synthetase family F:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVA C.G. S.X.
0.03 8e-3 42 At5g02020 831782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.04 8e-3 42 At4g03160 828054 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-3 44 Glycine max Gma.1324.2.S1_s_at BG352137 - - 8e-51 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) C.G. S.X.
0.04 1e-3 44 Hordeum vulgare Contig9398_s_at Contig9398 - - 1e+0 At1g43020 unknown protein C.G. S.X.
0.04 6e-2 40 Oryza sativa OsAffx.10449.1.S1_x_at - - - 0 C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.213352.1.S1_at pmrna26127 hypothetical protein - 1e+0 At2g22510 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 2e-3 44 Triticum aestivum TaAffx.52006.1.S1_at CA714803 - - 3e+0 At1g01305 unknown protein C.G. S.X.
0.04 2e-4 46 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.04 8e-1 34 Zea mays ZmAffx.283.1.A1_at AI670414 - - 3e+0 At3g23175 lesion inducing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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