CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g74000

Gene name SS3 (STRICTOSIDINE SYNTHASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g74000 843738 SS3 (STRICTOSIDINE SYNTHASE 3) encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis. S.X. H.G.
0.61 76.7 At1g70540 843391 EDA24 (embryo sac development arrest 24) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:polar nucleus fusion;C:endomembrane system;P S.X. H.G.
0.47 61.2 At2g03410 814870 Mo25 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.47 61.2 At1g28550 839755 AtRABA1i (Arabidopsis Rab GTPase homolog A1i) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA S.X. H.G.
0.47 61.2 At3g05140 819676 RBK2 (Rop Binding protein Kinases 2) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MPOBFVA S.X. H.G.
0.45 58.3 At3g01630 819891 - F:unknown;P:unknown;C:unknown;PBOFAM S.X. H.G.
0.44 57.2 At3g18220 821350 phosphatidic acid phosphatase family protein / PAP2 family protein F:catalytic activity, phosphatidate phosphatase activity;P:biological_process unknown;C:membrane;MFOBPAV S.X. H.G.
0.43 55.3 At3g60570 825228 ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.41 52.4 At1g52240 841654 ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily . S.X. H.G.
0.40 50.8 At1g44120 841015 C2 domain-containing protein / armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;PMOFBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
208.2 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
192.1 100.0 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
185.4 100.0 E-MEXP-285-raw-cel-440782725
164.4 100.0 E-MEXP-285-raw-cel-440782791
152.4 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
148.6 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
135.4 99.9 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
130.9 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
121.7 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
120.6 99.9 E-ATMX-35-raw-cel-1574334880
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 2e-74 280 At1g74010 843739 strictosidine synthase family protein F:strictosidine synthase activity;P:biosynthetic process;C:plant-type cell wall;PMBOA C.G. S.X.
0.56 1e-72 274 At1g74020 843740 SS2 (STRICTOSIDINE SYNTHASE 2) Encodes AtSS-2 strictosidine synthase. C.G. S.X.
0.02 3e-2 40 At5g40240 834022 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BPOAFM C.G. S.X.
0.02 3e-2 40 At4g31330 829260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO C.G. S.X.
0.01 1e-1 38 At5g56200 835719 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV C.G. S.X.
0.02 5e-1 36 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO C.G. S.X.
0.02 5e-1 36 At5g28500 832943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO C.G. S.X.
0.02 5e-1 36 At5g56660 835767 ILL2 encodes IAA-amino acid hydrolase that has a broad range of substrate specificity. It is most active on IAA-Ala among the IAA-conjugate hydrolases tested. C.G. S.X.
0.01 5e-1 36 At5g49340 834994 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.78496.1.S1_at BM085121 - - 3e-1 At1g24540 CYP86C1 C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig18710_at Contig18710 - - 5e+0 At2g20515 unknown protein C.G. S.X.
0.04 1e+0 36 Oryza sativa OsAffx.8826.1.S1_at - - - 0 C.G. S.X.
0.04 3e+0 34 Populus trichocarpa PtpAffx.224095.1.S1_at pmrna42332 hypothetical protein - 4e-1 At4g31390 ABC1 family protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.81130.2.S1_at CA614131 - - 7e-2 At1g74000 SS3 (STRICTOSIDINE SYNTHASE 3) C.G. S.X.
0.03 6e-4 44 Vitis vinifera 1622069_at CD801772 - - 2e+0 At1g74340 dolichol phosphate-mannose biosynthesis regulatory protein-related C.G. S.X.
0.02 3e+0 32 Zea mays Zm.11842.1.A1_at BM381178 - - 1e+0 At5g46730 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00331 Indole alkaloid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00901 Indole alkaloid biosynthesis
01063 Biosynthesis of alkaloids derived from shikimate pathway
01100 Metabolic pathways
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