Gene omics information

Query gene ID At1g74000
Gene name SS3 (STRICTOSIDINE SYNTHASE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g74000843738SS3 (STRICTOSIDINE SYNTHASE 3)encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis.S.X.H.G.
0.6176.7At1g70540843391EDA24 (embryo sac development arrest 24)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:polar nucleus fusion;C:endomembrane system;PS.X.H.G.
0.4761.2At2g03410814870Mo25 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.4761.2At1g28550839755AtRABA1i (Arabidopsis Rab GTPase homolog A1i)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAS.X.H.G.
0.4761.2At3g05140819676RBK2 (Rop Binding protein Kinases 2)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MPOBFVAS.X.H.G.
0.4558.3At3g01630819891-F:unknown;P:unknown;C:unknown;PBOFAMS.X.H.G.
0.4457.2At3g18220821350phosphatidic acid phosphatase family protein / PAP2 family proteinF:catalytic activity, phosphatidate phosphatase activity;P:biological_process unknown;C:membrane;MFOBPAVS.X.H.G.
0.4355.3At3g60570825228ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
0.4152.4At1g52240841654ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .S.X.H.G.
0.4050.8At1g44120841015C2 domain-containing protein / armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;PMOFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
208.2100.0GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
192.1100.0GSM106916opr3_JA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
185.4100.0E-MEXP-285-raw-cel-440782725
164.4100.0E-MEXP-285-raw-cel-440782791
152.499.9GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
148.699.9GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
135.499.9GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
130.999.9GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
121.799.9GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
120.699.9E-ATMX-35-raw-cel-1574334880
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.702e-74280At1g74010843739strictosidine synthase family proteinF:strictosidine synthase activity;P:biosynthetic process;C:plant-type cell wall;PMBOAC.G.S.X.
0.561e-72274At1g74020843740SS2 (STRICTOSIDINE SYNTHASE 2)Encodes AtSS-2 strictosidine synthase.C.G.S.X.
0.023e-240At5g40240834022nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:membrane;BPOAFMC.G.S.X.
0.023e-240At4g31330829260unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOC.G.S.X.
0.011e-138At5g56200835719zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBVC.G.S.X.
0.025e-136At5g10580830923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOC.G.S.X.
0.025e-136At5g28500832943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOC.G.S.X.
0.025e-136At5g56660835767ILL2encodes IAA-amino acid hydrolase that has a broad range of substrate specificity. It is most active on IAA-Ala among the IAA-conjugate hydrolases tested.C.G.S.X.
0.015e-136At5g49340834994unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-138Glycine maxGmaAffx.78496.1.S1_atBM085121--3e-1At1g24540CYP86C1C.G.S.X.
0.029e-134Hordeum vulgareContig18710_atContig18710--5e+0At2g20515unknown proteinC.G.S.X.
0.041e+036Oryza sativaOsAffx.8826.1.S1_at---0C.G.S.X.
0.043e+034Populus trichocarpaPtpAffx.224095.1.S1_atpmrna42332hypothetical protein-4e-1At4g31390ABC1 family proteinC.G.S.X.
0.031e-138Triticum aestivumTaAffx.81130.2.S1_atCA614131--7e-2At1g74000SS3 (STRICTOSIDINE SYNTHASE 3)C.G.S.X.
0.036e-444Vitis vinifera1622069_atCD801772--2e+0At1g74340dolichol phosphate-mannose biosynthesis regulatory protein-relatedC.G.S.X.
0.023e+032Zea maysZm.11842.1.A1_atBM381178--1e+0At5g46730glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00331Link to KaPPA-View 4Indole alkaloid biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00901Link to KEGG PATHWAYIndole alkaloid biosynthesis
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01100Link to KEGG PATHWAYMetabolic pathways
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