CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g73970

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.64 78.9 At1g73970 843735 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.60 75.7 At2g31450 817703 endonuclease-related F:4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:intracellular;BOAMFP S.X. H.G.
0.52 67.4 At2g32000 817760 DNA topoisomerase family protein F:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:endomembrane system, chromosome;BOMAFPV S.X. H.G.
0.52 67.4 At2g41020 818702 WW domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.50 65.3 At4g38170 829973 FRS9 (FAR1-related sequence 9) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PMF S.X. H.G.
0.50 65.3 At5g45300 834566 BMY2 (BETA-AMYLASE 2) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOF S.X. H.G.
0.47 61.2 At3g47390 823893 cytidine/deoxycytidylate deaminase family protein F:in 6 functions;P:riboflavin biosynthetic process;C:unknown;BOAFPMV S.X. H.G.
0.46 59.8 At4g31200 829247 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein F:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVA S.X. H.G.
0.45 58.3 At2g39910 818578 binding F:binding;P:biological_process unknown;C:unknown;MP S.X. H.G.
0.44 57.2 At5g11380 831009 DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3) Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.1 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
28.6 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.9 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.1 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.0 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.9 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.4 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.4 99.5 E-MEXP-1443-raw-cel-1581869573
17.1 99.5 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.0 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-15 85 At5g35695 833543 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF C.G. S.X.
0.01 8e-2 40 At3g59340 825103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPA C.G. S.X.
0.01 3e-1 38 At2g40940 818693 ERS1 (ETHYLENE RESPONSE SENSOR 1) Ethylene receptor, subfamily 1. Has histidine kinase activity. C.G. S.X.
0.01 1e+0 36 At3g09110 820065 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 36 At3g53790 824546 TRFL4 (TRF-LIKE 4) Arabidopsis thaliana telomere-binding protein, putative (At3g53790) C.G. S.X.
0.01 1e+0 36 At2g30990 817650 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBF C.G. S.X.
0.01 1e+0 36 At1g66920 843010 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Glycine max GmaAffx.56968.1.S1_at AI495288 - - 3e+0 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig9135_at Contig9135 - - 1e-42 At4g11820 MVA1 C.G. S.X.
0.02 2e+0 36 Oryza sativa Os02g0123400 9630.m00227 - Conserved hypothetical protein 1e+0 At1g73970 unknown protein C.G. S.X.
0.06 1e-4 50 Populus trichocarpa PtpAffx.207530.1.S1_at pmrna14946 hypothetical protein - 6e-5 At1g73970 unknown protein C.G. S.X.
0.01 3e-1 38 Triticum aestivum Ta.4289.1.A1_at BJ263431 - - 3e-1 At1g32640 MYC2 C.G. S.X.
0.04 6e-6 52 Vitis vinifera 1618954_at CF404862 hypothetical protein LOC100256489 - 6e-6 At1g73970 unknown protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.3775.1.A1_at AY103856.1 chaperonin - 3e-5 At1g14980 CPN10 (CHAPERONIN 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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