CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g73950

Gene name zinc finger (C3HC4-type RING finger) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g73950 843732 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:vacuole;MPOVF S.X. H.G.
0.54 69.5 At4g01280 827903 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:unknown;POM S.X. H.G.
0.47 61.2 At1g22870 838892 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.46 59.8 At5g15710 831425 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.46 59.8 At3g07930 819984 HhH-GPD base excision DNA repair family protein F:unknown;P:base-excision repair;C:unknown;MPO S.X. H.G.
0.43 55.3 At5g64390 836560 HEN4 (HUA ENHANCER 4) encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl. S.X. H.G.
0.32 35.7 At5g19420 832062 Ran GTPase binding / chromatin binding / zinc ion binding F:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOPBFAV S.X. H.G.
0.30 32.1 At2g41020 818702 WW domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.28 30.3 At3g55320 824698 PGP20 (P-GLYCOPROTEIN 20) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPV S.X. H.G.
0.27 26.2 At3g53090 824475 UPL7 encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
71.2 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.8 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.9 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.5 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.9 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.1 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.8 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
60.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.3 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 1049 At1g18470 838427 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVF C.G. S.X.
0.16 1e-17 91 At1g68820 843214 membrane protein, putative F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF C.G. S.X.
0.01 4e-2 40 At4g31450 829272 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.01 2e-1 38 At3g51930 824356 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA C.G. S.X.
0.01 2e-1 38 At2g14680 815956 myosin heavy chain-related F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOFBPAV C.G. S.X.
0.01 7e-1 36 At5g45250 834561 RPS4 (RESISTANT TO P. SYRINGAE 4) RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames. C.G. S.X.
0.02 3e+0 34 Atmg00400 - - hypothetical protein C.G. S.X.
0.01 3e+0 34 At5g56000 835698 heat shock protein 81-4 (HSP81-4) F:unfolded protein binding, ATP binding;P:protein folding;C:cytosol, apoplast, cell wall, nucleus, plasma membrane;OMBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-45 184 Glycine max GmaAffx.4382.2.S1_at BQ452666 - - 7e-46 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.17 3e-20 99 Hordeum vulgare Contig7543_at Contig7543 - - 3e-22 At1g68820 membrane protein, putative C.G. S.X.
0.24 3e-14 81 Oryza sativa Os03g0706900 AK065293.1 - Zn-finger, RING domain containing protein 2e-14 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.27 2e-29 131 Populus trichocarpa PtpAffx.49806.1.A1_at CV270678 hypothetical protein - 1e-29 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.14 2e-4 48 Triticum aestivum Ta.23181.1.S1_at CK153402 - - 2e-4 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1614219_at CF413920 similar to predicted protein - 3e-47 At5g10400 histone H3 C.G. S.X.
0.05 5e+0 32 Zea mays Zm.6521.1.A1_at AW067094 protein binding protein - 7e-5 At1g68820 membrane protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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