Gene omics information

Query gene ID At1g73950
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g73950843732zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:vacuole;MPOVFS.X.H.G.
0.5469.5At4g01280827903myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:unknown;POMS.X.H.G.
0.4761.2At1g22870838892protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.4659.8At5g15710831425F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.4659.8At3g07930819984HhH-GPD base excision DNA repair family proteinF:unknown;P:base-excision repair;C:unknown;MPOS.X.H.G.
0.4355.3At5g64390836560HEN4 (HUA ENHANCER 4)encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl.S.X.H.G.
0.3235.7At5g19420832062Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOPBFAVS.X.H.G.
0.3032.1At2g41020818702WW domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.2830.3At3g55320824698PGP20 (P-GLYCOPROTEIN 20)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPVS.X.H.G.
0.2726.2At3g53090824475UPL7encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
65.899.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
60.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8101049At1g18470838427zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVFC.G.S.X.
0.161e-1791At1g68820843214membrane protein, putativeF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVFC.G.S.X.
0.014e-240At4g31450829272zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.012e-138At3g51930824356transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAC.G.S.X.
0.012e-138At2g14680815956myosin heavy chain-relatedF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOFBPAVC.G.S.X.
0.017e-136At5g45250834561RPS4 (RESISTANT TO P. SYRINGAE 4)RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.C.G.S.X.
0.023e+034Atmg00400--hypothetical proteinC.G.S.X.
0.013e+034At5g56000835698heat shock protein 81-4 (HSP81-4)F:unfolded protein binding, ATP binding;P:protein folding;C:cytosol, apoplast, cell wall, nucleus, plasma membrane;OMBFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.292e-45184Glycine maxGmaAffx.4382.2.S1_atBQ452666--7e-46At1g73950zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.173e-2099Hordeum vulgareContig7543_atContig7543--3e-22At1g68820membrane protein, putativeC.G.S.X.
0.243e-1481Oryza sativaOs03g0706900AK065293.1-Zn-finger, RING domain containing protein2e-14At1g73950zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.272e-29131Populus trichocarpaPtpAffx.49806.1.A1_atCV270678hypothetical protein-1e-29At1g73950zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.142e-448Triticum aestivumTa.23181.1.S1_atCK153402--2e-4At1g73950zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.028e-134Vitis vinifera1614219_atCF413920similar to predicted protein-3e-47At5g10400histone H3C.G.S.X.
0.055e+032Zea maysZm.6521.1.A1_atAW067094protein binding protein-7e-5At1g68820membrane protein, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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