CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g73805

Gene name calmodulin binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.53 68.6 At1g74710 843810 isochorismate synthase 1 (ICS1) / isochorismate mutase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). S.X. H.G.
0.50 65.3 At3g52430 824408 PAD4 (PHYTOALEXIN DEFICIENT 4) Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. S.X. H.G.
0.46 59.8 At1g73800 - - - S.X. H.G.
0.46 59.8 At3g60420 825213 - F:unknown;P:unknown;C:cellular_component unknown;OBFPM S.X. H.G.
0.42 53.9 At4g38560 830013 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV S.X. H.G.
0.38 46.7 At5g26920 832750 CBP60G (CAM-BINDING PROTEIN 60-LIKE.G) Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
212.8 100.0 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
102.5 99.9 E-MEXP-807-raw-cel-1173273170
98.7 99.9 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
93.0 99.9 E-MEXP-546-raw-cel-863289586
92.4 99.9 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
84.5 99.9 GSM134369 St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
79.1 99.9 E-MEXP-807-raw-cel-1173273060
75.9 99.9 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
73.7 99.9 E-MEXP-807-raw-cel-1173273116
70.4 99.9 E-MEXP-807-raw-cel-1173273196
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-6 54 At2g18750 816390 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.04 5e-5 50 At2g24300 816966 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:unknown;PB C.G. S.X.
0.04 3e-3 44 At4g25800 828685 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.02 2e-1 38 At5g62570 836377 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At5g40320 834030 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM C.G. S.X.
0.02 2e-1 38 At2g47520 819365 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 36 Glycine max Gma.8301.4.S1_at AI416933 - - 1e-20 At4g25800 calmodulin-binding protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig17401_at Contig17401 - - 5e+0 At3g52800 zinc finger (AN1-like) family protein C.G. S.X.
0.03 9e-2 40 Oryza sativa Os04g0444200 AK072545.1 - Calmodulin-binding protein 60-B (Fragment) 2e-8 At2g18750 calmodulin-binding protein C.G. S.X.
0.15 6e-33 143 Populus trichocarpa PtpAffx.210421.1.S1_at pmrna20471 hypothetical protein - 4e-33 At1g73805 calmodulin binding C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.6231.1.S1_at CA684494 - - 4e+0 At4g02195 SYP42 (SYNTAXIN OF PLANTS 42) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620435_at CD721251 - - 9e-2 At1g12290 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.01 5e+0 32 Zea mays Zm.19078.1.A1_at CF048749 protein arginine N-methyltransferase 6 - 2e+0 At1g31170 SRX (SULFIREDOXIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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