CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g73655

Gene name FK506 binding / peptidyl-prolyl cis-trans isomerase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g73655 843700 FK506 binding / peptidyl-prolyl cis-trans isomerase F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMF S.X. H.G.
0.69 82.9 At1g18170 838396 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF S.X. H.G.
0.67 81.6 At3g09050 820058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAF S.X. H.G.
0.65 79.6 At1g20810 838672 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF S.X. H.G.
0.60 75.7 At1g03680 839436 ATHM1 encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. S.X. H.G.
0.58 73.8 At3g56650 824832 thylakoid lumenal 20 kDa protein F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBO S.X. H.G.
0.58 73.8 At1g20020 838591 FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma S.X. H.G.
0.57 73.8 At1g16880 838259 uridylyltransferase-related F:unknown;P:response to cold;C:chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope;PBO S.X. H.G.
0.56 73.0 At2g04700 815013 ferredoxin thioredoxin reductase catalytic beta chain family protein F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA S.X. H.G.
0.55 70.6 At5g27290 832787 unknown protein F:unknown;P:unknown;C:chloroplast;PBO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.0 99.4 GSM131154 AtGen_C-4_1-C-12_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
11.9 99.3 GSM131156 AtGen_C-6_3-C-12_REP3_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
10.9 99.2 GSM131155 AtGen_C-5_2-C-12_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
10.6 99.2 E-MEXP-432-raw-cel-590864422
10.4 99.2 GSM142812 SS002_ATH1_A4-smith-04h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
10.3 99.2 E-MEXP-1360-raw-cel-1561600590
9.9 99.1 GSM142811 SS002_ATH1_A3-smith-02h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
9.7 99.1 GSM77067 16h Col-0 replicate A GSE3416 Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
9.5 99.1 GSM142799 SS001_ATH1_A2-Smith-22 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
9.2 99.1 GSM264761 Tween 0.1% 1h GSE10464 Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 7e-18 91 At1g18170 838396 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF C.G. S.X.
0.02 1e+0 34 At5g11570 831029 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF C.G. S.X.
0.02 1e+0 34 At4g06599 826068 ubiquitin family protein F:phosphoprotein phosphatase activity;P:protein modification process;C:nucleus;MOPFVB C.G. S.X.
0.03 1e+0 34 At3g25727 822163 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+0 34 At1g32150 840107 bZIP transcription factor family protein F:transcription factor activity;P:transcription, DNA-dependent, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, chloroplast;MOPFBVA C.G. S.X.
0.01 1e+0 34 At1g70370 843373 BURP domain-containing protein / polygalacturonase, putative F:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAV C.G. S.X.
0.03 5e+0 32 At5g65300 836655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 5e+0 32 At5g38150 833795 PMI15 (plastid movement impaired 15) Involved in chloroplast avoidance movement under high-light intensities C.G. S.X.
0.01 5e+0 32 At5g22760 832339 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.82232.1.S1_at AW755425 - - 8e-1 At3g14362 RTFL10 (ROTUNDIFOLIA LIKE 10) C.G. S.X.
0.04 7e-1 34 Hordeum vulgare EBem10_SQ002_L23_s_at EBem10_SQ002_L23 - - 2e-1 At5g13070 MSF1-like family protein C.G. S.X.
0.03 1e-2 42 Oryza sativa Os03g0708500 9631.m04889 - Viral coat and capsid protein family protein 7e-3 At1g73655 FK506 binding / peptidyl-prolyl cis-trans isomerase C.G. S.X.
0.06 5e-1 36 Populus trichocarpa PtpAffx.62182.1.S1_a_at CV261082 hypothetical protein - 3e-2 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.39423.1.S1_at BG906394 - - 8e-1 At1g73655 FK506 binding / peptidyl-prolyl cis-trans isomerase C.G. S.X.
0.11 2e-3 42 Vitis vinifera 1619560_at CD721168 hypothetical protein LOC100247422 - 2e-6 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.16062.1.S1_at CF018530 - - 5e+0 At1g73655 FK506 binding / peptidyl-prolyl cis-trans isomerase C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage