CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g73600

Gene name methyltransferase/ phosphoethanolamine N-methyltransferase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g73600 843694 methyltransferase/ phosphoethanolamine N-methyltransferase F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV S.X. H.G.
0.49 63.5 At2g29650 817515 PHT4 Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane. S.X. H.G.
0.40 50.8 At2g20570 816579 GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1) Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus. S.X. H.G.
0.39 48.4 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase S.X. H.G.
0.35 41.6 At4g09900 826580 MES12 (METHYL ESTERASE 12) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. S.X. H.G.
0.33 38.1 At5g57345 835840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO S.X. H.G.
0.30 32.1 At5g14970 831349 unknown protein F:unknown;P:unknown;C:unknown;BOP S.X. H.G.
0.29 30.3 At1g75460 843882 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF S.X. H.G.
0.28 30.3 At2g29360 817485 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.26 24.4 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.3 99.6 E-MEXP-1454-raw-cel-1585858145
25.3 99.6 GSM269816 T8 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
24.2 99.6 GSM133114 JD AT+EO TIME EXP3 UNINF 4D GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
23.0 99.6 GSM133107 JD AT+EO TIME EXP3 EO INF 5D GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
22.5 99.6 E-MEXP-1454-raw-cel-1585858181
22.3 99.6 GSM133098 JD AT+EO COL WT EXP2 18H UNINFECTED GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
21.5 99.6 GSM133113 JD AT+EO TIME EXP3 UNINF 3D GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
21.3 99.6 E-MEXP-1454-raw-cel-1585858509
20.8 99.6 GSM133080 JD AT+EO COL WT 12H UNINFECTED GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
19.6 99.6 GSM133072 JD AT+EO COL WT 03D UNINFECTED GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 2e-81 303 At3g18000 821324 XPL1 (XIPOTL 1) Arabidopsis thaliana N-methyltransferase-like protein mRNA. C.G. S.X.
0.55 4e-70 266 At1g48600 841281 phosphoethanolamine N-methyltransferase 2, putative (NMT2) F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV C.G. S.X.
0.01 2e-1 38 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 7e-1 36 At5g19280 832048 KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor, a kinase interaction (KI) domain, and a type 2C protein phosphatase catalytic region C.G. S.X.
0.02 7e-1 36 At3g19950 821533 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.01 7e-1 36 At1g12130 837765 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOMFPA C.G. S.X.
0.01 7e-1 36 At1g01660 839461 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-7 57 Glycine max Gma.7085.1.S1_at BE820335 - - 7e-13 At3g18000 XPL1 (XIPOTL 1) C.G. S.X.
0.25 1e-19 97 Hordeum vulgare Contig4006_at Contig4006 - - 3e-59 At3g18000 XPL1 (XIPOTL 1) C.G. S.X.
0.23 2e-18 95 Oryza sativa Os01g0695100 AY551100.1 - Phosphoethanolamine methyltransferase 4e-37 At1g48600 phosphoethanolamine N-methyltransferase 2, putative (NMT2) C.G. S.X.
0.38 2e-60 234 Populus trichocarpa PtpAffx.52747.1.A1_at CV267203 - - 7e-56 At1g48600 phosphoethanolamine N-methyltransferase 2, putative (NMT2) C.G. S.X.
0.15 3e-6 54 Triticum aestivum Ta.7104.1.S1_at CK207653 - - 7e-39 At3g18000 XPL1 (XIPOTL 1) C.G. S.X.
0.48 3e-71 268 Vitis vinifera 1622556_at CB972747 hypothetical protein LOC100254279 - 6e-59 At1g73600 methyltransferase/ phosphoethanolamine N-methyltransferase C.G. S.X.
0.23 3e-32 139 Zea mays Zm.16907.1.S1_at AI691771 - - 4e-50 At3g18000 XPL1 (XIPOTL 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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