CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g73310

Gene name scpl4 (serine carboxypeptidase-like 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At1g73310 843665 scpl4 (serine carboxypeptidase-like 4) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.50 65.3 At1g35330 840422 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB S.X. H.G.
0.37 45.0 At1g73280 843662 scpl3 (serine carboxypeptidase-like 3) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.30 32.1 At5g10280 830892 ATMYB92 (MYB DOMAIN PROTEIN 92) Encodes a putative transcription factor (MYB92). S.X. H.G.
0.20 14.4 At1g72300 843562 leucine-rich repeat transmembrane protein kinase, putative Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion. S.X. H.G.
0.20 14.4 At2g23960 816929 defense-related protein, putative F:catalytic activity;P:defense response;C:cellular_component unknown;OBAFPM S.X. H.G.
0.19 12.7 At4g21230 827872 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.16 8.8 At1g50560 841477 CYP705A25 member of CYP705A S.X. H.G.
0.16 8.8 At1g07560 837270 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
151.4 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
148.8 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
116.7 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
73.6 99.9 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
57.5 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.6 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.4 99.8 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.3 99.8 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
51.2 99.8 GSM260883 Yap_A2-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
50.3 99.8 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.91 0 1653 At1g73300 843664 scpl2 (serine carboxypeptidase-like 2) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.90 0 1637 At5g36180 833615 scpl1 (serine carboxypeptidase-like 1) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.89 0 1546 At1g73280 843662 scpl3 (serine carboxypeptidase-like 3) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.86 0 1049 At1g73290 843663 scpl5 (serine carboxypeptidase-like 5) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.82 0 985 At1g73270 843661 scpl6 (serine carboxypeptidase-like 6) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.73 4e-172 605 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-1 36 Glycine max GmaAffx.60252.1.S1_at BI321448 - - 6e-9 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.05 8e-2 38 Hordeum vulgare Contig17621_at Contig17621 - - 1e-1 At1g73310 scpl4 (serine carboxypeptidase-like 4) C.G. S.X.
0.03 9e-5 50 Oryza sativa Os11g0460800 AK066902.1 - Peptidase S10, serine carboxypeptidase familyprotein 6e-5 At5g36180 scpl1 (serine carboxypeptidase-like 1) C.G. S.X.
0.18 3e-13 77 Populus trichocarpa PtpAffx.216396.1.S1_at pmrna31154 hypothetical protein - 1e-14 At5g36180 scpl1 (serine carboxypeptidase-like 1) C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.110147.1.S1_at BG905569 - - 1e+1 At4g37409 unknown protein C.G. S.X.
0.05 2e-1 36 Vitis vinifera 1607463_at CB343440 hypothetical protein LOC100255717 - 1e-12 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.6790.1.A1_at AI396367 shugoshin-1 - 3e+0 At2g05335 SCRL15 (SCR-Like 15) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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