CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g73300

Gene name scpl2 (serine carboxypeptidase-like 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.11 4.1 At1g73300 843664 scpl2 (serine carboxypeptidase-like 2) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.86 93.1 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB S.X. H.G.
0.60 75.7 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.55 70.6 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
392.8 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
189.2 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
127.4 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
119.8 99.9 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
102.5 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
81.6 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
80.7 99.9 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
77.7 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.0 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
63.2 99.8 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.97 0 2304 At5g36180 833615 scpl1 (serine carboxypeptidase-like 1) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.91 0 1653 At1g73310 843665 scpl4 (serine carboxypeptidase-like 4) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.89 0 1598 At1g73280 843662 scpl3 (serine carboxypeptidase-like 3) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.89 0 1505 At1g73290 843663 scpl5 (serine carboxypeptidase-like 5) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.83 0 967 At1g73270 843661 scpl6 (serine carboxypeptidase-like 6) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.75 0 660 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-2 40 Glycine max Gma.2669.1.S1_at CA935964 - - 4e-6 At5g09640 SCPL19 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HV_CEb0021O09r2_at HV_CEb0021O09r2 - - 4e+0 At5g48420 unknown protein C.G. S.X.
0.07 9e-5 50 Oryza sativa Os11g0460800 AK066902.1 - Peptidase S10, serine carboxypeptidase familyprotein 6e-5 At5g36180 scpl1 (serine carboxypeptidase-like 1) C.G. S.X.
0.21 1e-15 85 Populus trichocarpa PtpAffx.216395.1.S1_x_at pmrna31153 hypothetical protein - 7e-16 At1g73300 scpl2 (serine carboxypeptidase-like 2) C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.110147.1.S1_at BG905569 - - 1e+1 At4g37409 unknown protein C.G. S.X.
0.05 8e-7 54 Vitis vinifera 1607463_at CB343440 hypothetical protein LOC100255717 - 1e-12 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.427.1.S1_at AI676861 - - 8e-1 At5g64670 ribosomal protein L15 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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