CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g72950

Gene name disease resistance protein (TIR-NBS class), putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At1g72950 843626 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBM S.X. H.G.
1.00 100.0 At4g38530 830010 ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1) Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670. S.X. H.G.
0.80 89.8 At5g38310 833813 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MP S.X. H.G.
0.75 86.9 At2g21910 816727 CYP96A5 member of CYP96A S.X. H.G.
0.57 73.8 At2g27320 817275 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
393.5 100.0 E-MEXP-807-raw-cel-1173273144
366.0 100.0 E-MEXP-807-raw-cel-1173273252
233.2 100.0 E-MEXP-807-raw-cel-1173273116
216.9 100.0 E-MEXP-807-raw-cel-1173273170
206.7 100.0 E-MEXP-807-raw-cel-1173273060
98.3 99.9 E-MEXP-807-raw-cel-1173273223
77.7 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.3 99.9 E-MEXP-807-raw-cel-1173273088
67.2 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.3 99.8 E-MEXP-807-raw-cel-1173273196
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 8e-176 617 At1g72940 843625 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB C.G. S.X.
0.59 1e-168 593 At1g72920 843623 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:response to wounding, defense response;C:intrinsic to membrane;PB C.G. S.X.
0.68 1e-115 416 At1g72900 843621 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.50 2e-77 289 At1g72910 843622 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.43 4e-76 286 At1g72930 843624 TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE) Toll/interleukin-1 receptor-like protein (TIR) mRNA, C.G. S.X.
0.23 3e-18 93 At1g72890 843620 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.35 1e-17 91 At1g17615 838338 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.01 1e-1 38 At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-3 44 Glycine max GmaAffx.28100.1.S1_at BM107905 - - 2e-3 At1g72950 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig23388_at Contig23388 - - 6e-1 At1g70600 structural constituent of ribosome C.G. S.X.
0.01 4e+0 34 Oryza sativa Os09g0407800 AK105259.1 - TPR-like domain containing protein 8e-2 At1g76020 - C.G. S.X.
0.02 5e-2 40 Populus trichocarpa PtpAffx.132407.2.A1_a_at BP930395 hypothetical protein - 1e+0 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.19508.1.S1_at CA652832 - - 1e+0 At5g67620 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619739_at CB341962 hypothetical protein LOC100265726 - 1e-3 At2g39270 adenylate kinase family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.15640.1.A1_at BM075602 hypothetical protein LOC100280329 - 1e+0 At2g10560 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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