CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g72940

Gene name disease resistance protein (TIR-NBS class), putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g72940 843625 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB S.X. H.G.
0.74 86.1 At5g22250 832285 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF S.X. H.G.
0.68 82.2 At3g55980 824764 SZF1 (SALT-INDUCIBLE ZINC FINGER 1) F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV S.X. H.G.
0.64 78.9 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase S.X. H.G.
0.64 78.9 At2g38470 818429 WRKY33 Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. S.X. H.G.
0.63 78.1 At4g27280 828836 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:unknown;MPOF S.X. H.G.
0.62 77.3 At5g41740 834177 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA S.X. H.G.
0.61 76.7 At5g04340 830313 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) putative c2h2 zinc finger transcription factor mRNA, S.X. H.G.
0.61 76.7 At1g72900 843621 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO S.X. H.G.
0.60 75.7 At2g26530 817194 AR781 unknown function S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
131.1 99.9 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
124.5 99.9 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
115.2 99.9 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
105.9 99.9 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
94.0 99.9 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
93.6 99.9 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
92.9 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
85.0 99.9 E-MEXP-807-raw-cel-1173273088
80.7 99.9 E-MEXP-807-raw-cel-1173273170
80.6 99.9 E-MEXP-807-raw-cel-1173273252
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 1201 At1g72920 843623 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:response to wounding, defense response;C:intrinsic to membrane;PB C.G. S.X.
0.80 8e-176 617 At1g72950 843626 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBM C.G. S.X.
0.77 2e-120 432 At1g72900 843621 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.43 3e-95 349 At1g72930 843624 TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE) Toll/interleukin-1 receptor-like protein (TIR) mRNA, C.G. S.X.
0.59 2e-90 333 At1g72910 843622 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.30 6e-13 75 At1g17615 838338 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.01 6e-4 46 At4g09430 826526 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV C.G. S.X.
0.08 2e-3 44 At1g72890 843620 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max PsAffx.psML007xN09f_at PsAffx.psML007xN09f - - 6e-1 At1g72940 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig4754_s_at Contig4754 - - 2e-17 At2g19790 clathrin adaptor complex small chain family protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os07g0172500 AK068132.1 - DNA-directed RNA polymerase II 13.6 kDapolypeptide (EC 2.7.7.6) 2e+0 At3g52090 NRPB11 C.G. S.X.
0.03 5e-2 40 Populus trichocarpa PtpAffx.225310.1.S1_s_at pmrna44568 hypothetical protein /// tir-nbs-lrr resistance protein - 1e-2 At1g72920 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.37585.1.S1_x_at BJ267502 - - 1e+0 At1g72920 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1621239_at CF517123 - - 2e+0 At4g13266 unknown protein C.G. S.X.
0.02 1e-2 40 Zea mays Zm.4216.1.A1_at AW066666 peptidyl-prolyl isomerase PASTICCINO1 - 2e-9 At3g54010 PAS1 (PASTICCINO 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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