CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g72460

Gene name leucine-rich repeat transmembrane protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g72460 843578 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
1.00 100.0 At1g04760 839424 ATVAMP726 member of Synaptobrevin -like protein family S.X. H.G.
0.80 89.8 At3g58160 824985 XIJ Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants S.X. H.G.
0.67 81.6 At2g01330 814661 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA S.X. H.G.
0.22 17.5 At3g10540 820219 3-phosphoinositide-dependent protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
205.7 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
133.7 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
87.3 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
76.3 99.9 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
76.0 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
75.7 99.9 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
73.2 99.9 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
70.7 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
63.7 99.8 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
62.6 99.8 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-3 46 At4g27290 828837 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:sugar binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e-3 44 At4g11490 826754 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e-3 44 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-2 42 At5g20690 832192 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 2e-1 38 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-1 38 At1g30190 839899 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e-1 38 At1g61360 842430 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 1e+0 36 At5g65520 836678 binding F:binding;P:biological_process unknown;C:cellular_component unknown;BPO C.G. S.X.
0.01 1e+0 36 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Glycine max GmaAffx.71710.1.S1_at BG047266 - - 1e-6 At3g45860 receptor-like protein kinase, putative C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig11190_at Contig11190 - - 1e+0 At1g15390 PDF1A (PEPTIDE DEFORMYLASE 1A) C.G. S.X.
0.02 5e-1 38 Oryza sativa Os03g0557600 9631.m03417 - - 2e-1 At5g42635 glycine-rich protein C.G. S.X.
0.03 9e-2 40 Populus trichocarpa PtpAffx.217033.1.S1_at pmrna32146 hypothetical protein - 6e-2 At1g72460 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 6e-2 40 Triticum aestivum TaAffx.117638.1.S1_at BJ273156 - - 2e+0 At1g66070 translation initiation factor-related C.G. S.X.
0.02 5e+0 32 Vitis vinifera 1609660_at CB972323 hypothetical protein LOC100263702 - 4e-1 At4g00895 ATP synthase delta chain-related C.G. S.X.
0.01 1e-1 38 Zea mays Zm.1562.1.A1_at BM074498 hypothetical protein LOC100193316 - 5e+0 At5g49015 Expressed protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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