Gene omics information

Query gene ID At1g72310
Gene name ATL3
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g72310843563ATL3Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).S.X.H.G.
0.2930.3At2g40980818698-F:unknown;P:unknown;C:plasma membrane;BPOS.X.H.G.
0.1811.4At4g25680828673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFS.X.H.G.
0.157.8At5g43880834410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMBFS.X.H.G.
0.114.1At1g75840843917ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5)Belongs to the plant-specific ROP group of Rho GTPases; localized to the plasma membrane of tips of root hairs; involved in polar growth control.S.X.H.G.
0.114.1At5g48520834908unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;MOPFBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
326.9100.0GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
57.599.8GSM266673Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
31.599.7GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
30.399.7GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
28.299.7GSM184898Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
26.399.7GSM266674Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
25.799.7GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
22.399.6GSM184899Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
20.699.6GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
18.799.5GSM265422Arabidopsis, root, longitudinal zone 3, standard conditions, rep1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.042e-654At3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.C.G.S.X.
0.072e-654At1g53820841819zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.041e-448At2g18650816380MEE16 (maternal effect embryo arrest 16)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:chloroplast;PMOFVC.G.S.X.
0.011e-138At4g27430828851CIP7 (COP1-INTERACTING PROTEIN 7)Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.C.G.S.X.
0.015e-136At5g64270836548splicing factor, putativeF:binding;P:mRNA processing;C:chloroplast;MFOBPAVC.G.S.X.
0.015e-136At4g222855008155ubiquitin thiolesterase/ zinc ion bindingF:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFPC.G.S.X.
0.015e-136At4g22350828330ubiquitin carboxyl-terminal hydrolase family proteinF:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFPC.G.S.X.
0.012e+034At5g53520835434ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8)oligopeptide transporterC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-344Glycine maxGmaAffx.42668.1.S1_atBU761245--2e-8At3g16720ATL2C.G.S.X.
0.034e+032Hordeum vulgareHV_CEb0005M21r2_s_atHV_CEb0005M21r2--3e+0At1g15800unknown proteinC.G.S.X.
0.029e-136Oryza sativaOsAffx.21676.1.S1_at---0C.G.S.X.
0.092e-757Populus trichocarpaPtpAffx.204793.1.S1_x_atpmrna9444hypothetical protein-2e-8At1g72310ATL3C.G.S.X.
0.032e+034Triticum aestivumTaAffx.26634.1.S1_atCA686921--6e-1At3g55646unknown proteinC.G.S.X.
0.042e-342Vitis vinifera1622773_atCF605812hypothetical protein LOC100253381-2e-2At4g15975protein binding / zinc ion bindingC.G.S.X.
0.038e-134Zea maysZm.19239.1.A1_atCO529234hypothetical protein LOC100191783-2e+0At1g72310ATL3C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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