CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g72280

Gene name AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At1g72280 843560 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) endoplasmic reticulum oxidoreductin S.X. H.G.
0.40 50.8 At1g42990 840897 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. S.X. H.G.
0.39 48.4 At3g09410 820100 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB S.X. H.G.
0.36 43.6 At5g22540 832315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.35 41.6 At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. S.X. H.G.
0.32 35.7 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.28 30.3 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.26 24.4 At3g55950 824761 CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.23 19.3 At5g44070 834430 CAD1 (CADMIUM SENSITIVE 1) Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+. S.X. H.G.
0.23 19.3 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.8 99.9 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
66.9 99.8 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
65.4 99.8 GSM134404 St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
57.1 99.8 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
57.1 99.8 GSM134405 St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
52.5 99.8 GSM134403 St.Clair_1-100_268b_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
44.9 99.8 E-MEXP-807-raw-cel-1173273116
44.7 99.8 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
38.9 99.8 GSM131580 ATGE_32_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
38.0 99.8 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-24 113 At2g38960 818481 AERO2 (Arabidopsis endoplasmic reticulum oxidoreductins 2) endoplasmic reticulum oxidoreductin C.G. S.X.
0.01 7e-1 36 At5g54390 835527 AHL (ARABIDOPSIS HAL2-LIKE) Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation. C.G. S.X.
0.01 7e-1 36 At3g24880 822086 DNA binding F:DNA binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.01 7e-1 36 At3g24870 822085 DNA binding F:DNA binding;P:unknown;C:apoplast;MOFPBVA C.G. S.X.
0.01 3e+0 34 At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family C.G. S.X.
0.01 3e+0 34 At4g27790 828892 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB C.G. S.X.
0.01 3e+0 34 At4g36630 829815 EMB2754 (EMBRYO DEFECTIVE 2754) F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP C.G. S.X.
0.02 3e+0 34 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-18 95 Glycine max Gma.6198.2.S1_at BF324743 - - 3e-23 At2g38960 AERO2 (Arabidopsis endoplasmic reticulum oxidoreductins 2) C.G. S.X.
0.24 6e-15 81 Hordeum vulgare Contig4199_at Contig4199 - - 2e-14 At1g72280 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) C.G. S.X.
0.15 2e-15 85 Oryza sativa Os.27846.1.S1_at - - - 0 C.G. S.X.
0.37 2e-38 161 Populus trichocarpa PtpAffx.29592.1.S1_at CV278968 hypothetical protein - 1e-38 At1g72280 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) C.G. S.X.
0.14 5e-8 59 Triticum aestivum Ta.1995.2.S1_at CA607259 - - 2e-8 At1g72280 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1615897_at CF515994 hypothetical protein LOC100246578 - 5e+0 At3g25120 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein C.G. S.X.
0.01 3e-1 36 Zea mays Zm.584.3.S1_a_at M73029.1 pericarp color1 - 3e-8 At4g38620 MYB4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006467 Oxidation of two organic sulfhydryl groups (thiols) by a disulfide compound to form a disulfide bond.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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