CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g72260

Gene name THI2.1 (THIONIN 2.1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At1g72260 843558 THI2.1 (THIONIN 2.1) Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. S.X. H.G.
0.57 73.8 At3g46770 823830 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At5g21150 832241 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.50 65.3 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV S.X. H.G.
0.50 65.3 At5g58782 835993 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
218.4 100.0 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
177.0 100.0 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
155.8 99.9 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
154.8 99.9 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
147.9 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
141.6 99.9 GSM10478 lec1-1 24-Hr Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
140.9 99.9 GSM10477 lec1-1 24-Hr Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
127.3 99.9 GSM10445 WT 24-Hr Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
121.3 99.9 GSM10446 WT 24-Hr Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
112.7 99.9 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 6e-14 77 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. C.G. S.X.
0.33 9e-10 63 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. C.G. S.X.
0.04 5e-2 38 At1g71310 843472 unknown protein F:molecular_function unknown;P:unknown;C:unknown;POB C.G. S.X.
0.08 2e-1 36 At2g15010 815990 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. C.G. S.X.
0.04 8e-1 34 At5g28463 832934 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown C.G. S.X.
0.03 8e-1 34 At1g26960 839587 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.01 3e+0 32 At3g55200 824686 splicing factor, putative F:nucleic acid binding;P:biological_process unknown;C:nucleus, chloroplast;MFOPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max HgAffx.21013.1.S1_at BI748740 - - 3e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.04 4e-1 34 Hordeum vulgare Contig24683_at Contig24683 - - 7e-2 At3g32160 unknown protein C.G. S.X.
0.02 6e+0 32 Oryza sativa Os.7121.1.S1_at - - - 0 C.G. S.X.
0.03 7e-2 38 Populus trichocarpa PtpAffx.88837.1.A1_at CV250492 - - 9e-2 At1g72260 THI2.1 (THIONIN 2.1) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.23270.3.S1_at CA737435 - - 4e-2 At4g30490 AFG1-like ATPase family protein C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1606707_at CF404598 hypothetical protein LOC100248187 - 2e-2 At2g41630 TFIIB (TRANSCRIPTION FACTOR II B) C.G. S.X.
0.03 5e+0 30 Zea mays Zm.6325.1.A1_at CF625024 snRK1-interacting protein 1 - 6e+0 At5g24355 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
X GO:0009867 A series of molecular signals mediated by jasmonic acid.
S GO:0009751 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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