CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g72240

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.35 41.6 At1g32920 840186 unknown protein F:molecular_function unknown;P:response to wounding;C:endomembrane system;P S.X. H.G.
0.32 35.7 At3g46620 823815 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB S.X. H.G.
0.25 22.6 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA S.X. H.G.
0.21 15.8 At3g57450 824912 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.20 14.4 At4g27280 828836 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:unknown;MPOF S.X. H.G.
0.20 14.4 At3g28340 822462 GATL10 (Galacturonosyltransferase-like 10) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.18 11.4 At4g36500 829802 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.14 6.8 At3g12830 820465 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.13 5.8 At3g16720 820924 ATL2 RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
105.2 99.9 GSM128783 Somerville_1-6_flower-GH5_Rep1_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
80.2 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
65.7 99.8 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
61.4 99.8 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
49.7 99.8 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
44.5 99.8 GSM218585 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.3 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.1 99.8 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
43.7 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.4 99.8 GSM157318 Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.29 3e-9 61 At1g22470 838853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.21 2e-4 46 At1g35210 840410 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.01 3e-3 42 At1g64570 842765 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.06 1e-2 40 At2g12875 815766 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 4e-2 38 At4g26630 828770 - F:unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.04 4e-2 38 At3g14670 820695 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Glycine max PsAffx.CL2374Contig1_at PsAffx.CL2374Contig1 - - 2e-1 At1g72240 unknown protein C.G. S.X.
0.07 3e-1 34 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.04 3e-1 36 Oryza sativa Os.46050.1.A1_x_at - - - 0 C.G. S.X.
0.06 6e-2 38 Populus trichocarpa PtpAffx.81373.1.S1_at CX174504 - - 4e-2 At1g72240 unknown protein C.G. S.X.
0.05 2e-1 36 Triticum aestivum Ta.5911.1.S1_at BJ291912 - - 5e-2 At2g37470 histone H2B, putative C.G. S.X.
0.06 2e-1 34 Vitis vinifera 1614412_s_at CB971898 hypothetical protein LOC100243985 - 5e-1 At3g17160 unknown protein C.G. S.X.
0.04 1e+0 32 Zea mays Zm.4040.1.A1_at AI834032 - - 5e+0 At1g53785 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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