Gene omics information

Query gene ID At1g72200
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2930.3At1g72200843552zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
0.6781.6At2g32270817787ZIP3A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.S.X.H.G.
0.6781.6At3g22570821829protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.6781.6At5g42500834257disease resistance-responsive family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PS.X.H.G.
0.3846.7At5g17820831650peroxidase 57 (PER57) (P57) (PRXR10)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
199.1100.0GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
138.699.9GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
115.499.9GSM266671Arabidopsis, root cells, cortex, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
96.299.9GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
93.999.9GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
93.499.9GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
92.299.9GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
76.499.9GSM265424Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
62.299.8GSM179963Arabidopsis aux1 mutant roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
59.099.8GSM179960Arabidopsis roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.322e-31137At1g22500838856zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.047e-1065At2g34990818063zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.036e-756At3g05200819684ATL6Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).C.G.S.X.
0.026e-446At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVC.G.S.X.
0.032e-344At4g09100826488zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.042e-344At2g35000818064zinc finger (C3HC4-type RING finger) family proteinE3 ligase-like protein induced by chitin oligomers.C.G.S.X.
0.024e-240At4g09120826490zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.034e-240At1g35330840422zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.012e-138At5g17970831664disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-654Glycine maxGmaAffx.28563.1.S1_atBQ094213--9e-7At1g22500zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.025e-342Hordeum vulgareContig24618_atContig24618--3e-1At5g13180ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)C.G.S.X.
0.033e-138Oryza sativaOs10g0574400AK059974.1-The start codon is not identified.1e-1At1g72200zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.131e-1275Populus trichocarpaPtpAffx.118885.1.S1_s_atDN502040hypothetical protein-4e-13At1g72200zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.021e+132Triticum aestivumTaAffx.5357.1.S1_atCA713422--5e-1At2g23320WRKY15C.G.S.X.
0.022e-136Vitis vinifera1621851_atBQ800610--1e+0At5g63370protein kinase family proteinC.G.S.X.
0.021e+034Zea maysZm.8037.1.A1_atBM073083--1e+0At5g58580ATL63 (ARABIDOPSIS TÓC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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