CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g72100

Gene name late embryogenesis abundant domain-containing protein / LEA domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV S.X. H.G.
0.77 88.0 At2g28420 817390 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA S.X. H.G.
0.76 87.4 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.74 86.1 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.71 84.2 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
0.71 84.2 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA S.X. H.G.
0.70 83.5 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.69 82.9 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.69 82.9 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV S.X. H.G.
0.60 75.7 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
772.1 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
768.5 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
298.7 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
249.0 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
236.7 100.0 E-MEXP-849-raw-cel-1181980982
217.6 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
183.4 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
167.4 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
145.9 99.9 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
140.6 99.9 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 2e-13 77 At1g22600 838866 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF C.G. S.X.
0.02 3e-3 44 At4g24805 828583 methyltransferase F:methyltransferase activity;P:metabolic process;C:endomembrane system;POBAF C.G. S.X.
0.01 5e-2 40 At5g41320 834134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.02 2e-1 38 At4g26965 828804 NADH:ubiquinone oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:biological_process unknown;C:membrane;OMFBP C.G. S.X.
0.01 7e-1 36 At5g51330 835207 SWI1 (SWITCH1) Encodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis. Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.91033.1.S1_at CF808011 - - 1e-1 At3g26180 CYP71B20 C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig12232_at Contig12232 - - 8e-3 At1g22600 - C.G. S.X.
0.02 4e-1 38 Oryza sativa OsAffx.8826.1.S1_at - - - 0 C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.206883.1.S1_at pmrna13665 hypothetical protein - 1e+0 At5g01881 unknown protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.30652.1.S1_at CA623146 - - 3e-4 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1621439_s_at CB343781 hypothetical protein LOC100262404 - 6e-3 At1g71520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 1e+0 34 Zea mays Zm.5087.1.A1_at AI600775 - - 3e-1 At5g37478 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage