Gene omics information

Query gene ID At1g72100
Gene name late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At1g72100843541late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAVS.X.H.G.
0.7788.0At2g28420817390lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAS.X.H.G.
0.7687.4At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.7486.1At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.7184.2At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.7184.2At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAS.X.H.G.
0.7083.5At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.6982.9At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6982.9At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVS.X.H.G.
0.6075.7At4g27530828862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
772.1100.0GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
768.5100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
298.7100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
249.0100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
236.7100.0E-MEXP-849-raw-cel-1181980982
217.6100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
183.4100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
167.4100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
145.999.9GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
140.699.9GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.222e-1377At1g22600838866-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFC.G.S.X.
0.023e-344At4g24805828583methyltransferaseF:methyltransferase activity;P:metabolic process;C:endomembrane system;POBAFC.G.S.X.
0.015e-240At5g41320834134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.022e-138At4g26965828804NADH:ubiquinone oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:biological_process unknown;C:membrane;OMFBPC.G.S.X.
0.017e-136At5g51330835207SWI1 (SWITCH1)Encodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis. Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.91033.1.S1_atCF808011--1e-1At3g26180CYP71B20C.G.S.X.
0.023e-136Hordeum vulgareContig12232_atContig12232--8e-3At1g22600-C.G.S.X.
0.024e-138Oryza sativaOsAffx.8826.1.S1_at---0C.G.S.X.
0.024e+034Populus trichocarpaPtpAffx.206883.1.S1_atpmrna13665hypothetical protein-1e+0At5g01881unknown proteinC.G.S.X.
0.027e-136Triticum aestivumTaAffx.30652.1.S1_atCA623146--3e-4At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
0.028e-134Vitis vinifera1621439_s_atCB343781hypothetical protein LOC100262404-6e-3At1g71520AP2 domain-containing transcription factor, putativeC.G.S.X.
0.021e+034Zea maysZm.5087.1.A1_atAI600775--3e-1At5g37478-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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