Gene omics information

Query gene ID At1g71460
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At1g71460843487pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.6378.1At1g78010844136tRNA modification GTPase, putativeF:GTP binding, GTPase activity;P:small GTPase mediated signal transduction, tRNA modification;C:intracellular;BOMAFPS.X.H.G.
0.4862.5At5g58370835949GTP bindingF:GTP binding;P:unknown;C:intracellular;BOFAPMS.X.H.G.
0.4659.8At3g12210820401sequence-specific DNA bindingF:sequence-specific DNA binding;P:biological_process unknown;C:intracellular;MFPOAS.X.H.G.
0.4659.8At2g33820817949MBAC1encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosolS.X.H.G.
0.4457.2At1g26090839150unknown proteinF:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFPS.X.H.G.
0.4457.2At2g39910818578bindingF:binding;P:biological_process unknown;C:unknown;MPS.X.H.G.
0.4152.4At4g19070827645cadmium-responsive protein / cadmium induced protein (AS8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VPOMBAS.X.H.G.
0.4152.4At5g45300834566BMY2 (BETA-AMYLASE 2)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOFS.X.H.G.
0.4050.8At1g78690844205phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:unknown;BMOFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
88.099.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.499.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.099.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
54.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
53.299.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
50.299.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
46.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
42.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-346At1g09680837496pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.012e-242At1g71060843446pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.012e-242At1g08070837325pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.027e-240At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PC.G.S.X.
0.017e-240At3g14730820701pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.017e-240At1g68930843226pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.017e-240At1g55890842039pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFBAC.G.S.X.
0.013e-138At3g22150821779pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-448Glycine maxGma.17195.1.S1_atAW200893--5e-5At1g71460pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.072e-654Hordeum vulgareContig12170_atContig12170--4e-6At1g71460pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.018e-344Oryza sativaOs06g04938009634.m02860-TPR-like domain containing protein2e-2At1g71460pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.174e-757Populus trichocarpaPtpAffx.212333.1.S1_atpmrna24180hypothetical protein-3e-7At1g71460pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.021e+036Triticum aestivumTaAffx.55823.1.S1_atCA660715--1e+1At5g07572unknown proteinC.G.S.X.
0.018e-238Vitis vinifera1621309_atCB345448hypothetical protein LOC100260621-1e+0At3g42570peroxidase-relatedC.G.S.X.
0.012e+034Zea maysZm.6340.1.A1_atAI691460--1e+0At4g39730lipid-associated family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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