CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g71400

Gene name AtRLP12 (Receptor Like Protein 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At1g71400 843481 AtRLP12 (Receptor Like Protein 12) F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
0.50 65.3 At3g45650 823707 NAXT1 (NITRATE EXCRETION TRANSPORTER1) Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots. S.X. H.G.
0.21 15.8 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.16 8.8 At5g18860 832004 inosine-uridine preferring nucleoside hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA S.X. H.G.
0.15 7.8 At5g39970 833994 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.9 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
57.5 99.8 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
48.7 99.8 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
48.6 99.8 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
47.9 99.8 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
45.2 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.9 99.8 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
44.1 99.8 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
42.4 99.8 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
38.9 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.62 7e-138 492 At1g71390 843480 AtRLP11 (Receptor Like Protein 11) F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.37 9e-51 202 At3g05360 819700 AtRLP30 (Receptor Like Protein 30) F:protein binding, kinase activity;P:defense response signaling pathway, resistance gene-independent, response to cyclopentenone, signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.25 8e-36 153 At3g05370 819701 AtRLP31 (Receptor Like Protein 31) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.13 3e-23 111 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.14 2e-11 71 At3g23120 821887 AtRLP38 (Receptor Like Protein 38) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.09 9e-11 69 At3g23010 821875 AtRLP36 (Receptor Like Protein 36) F:protein binding;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV C.G. S.X.
0.04 1e-6 56 At4g13810 827015 AtRLP47 (Receptor Like Protein 47) F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV C.G. S.X.
0.04 2e-5 52 At4g13920 827026 AtRLP50 (Receptor Like Protein 50) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.03 1e-3 46 At5g25910 832660 AtRLP52 (Receptor Like Protein 52) putative disease resistance protein induced by chitin oligomers. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Glycine max GmaAffx.51099.1.S1_at BM526646 - - 3e+0 At3g18165 MOS4 (Modifier of snc1,4) C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig16054_at Contig16054 - - 4e-1 At1g06830 glutaredoxin family protein C.G. S.X.
0.02 3e+0 36 Oryza sativa OsAffx.9156.2.S1_at - - - 0 C.G. S.X.
0.02 2e-3 46 Populus trichocarpa PtpAffx.215168.1.S1_x_at pmrna29209 hypothetical protein - 5e-4 At1g71400 AtRLP12 (Receptor Like Protein 12) C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.21809.1.S1_at CA703261 - - 3e+0 At3g18400 anac058 (Arabidopsis NAC domain containing protein 58) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1622645_at CF208259 hypothetical protein LOC100245405 - 1e-83 At1g01050 AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1) C.G. S.X.
0.01 9e+0 32 Zea mays Zm.6013.1.A1_at CF349239 hypothetical protein LOC100276095 - 2e-19 At5g01010 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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