CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g71380

Gene name ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.97 97.6 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.86 93.1 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.81 90.4 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I S.X. H.G.
0.80 89.8 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM S.X. H.G.
0.76 87.4 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.67 81.6 At1g68360 843165 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO S.X. H.G.
0.67 81.6 At5g11410 831012 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.58 73.8 At5g25190 832590 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. S.X. H.G.
0.55 70.6 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
364.6 100.0 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
250.1 100.0 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
226.4 100.0 E-MEXP-1797-raw-cel-1669768048
182.6 100.0 E-MEXP-1797-raw-cel-1669767958
172.5 100.0 E-ATMX-13-raw-cel-1556149871
171.9 100.0 E-MEXP-1797-raw-cel-1669767976
166.6 100.0 E-ATMX-31-raw-cel-1516947882
153.8 99.9 E-MEXP-1797-raw-cel-1669768057
150.1 99.9 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
146.1 99.9 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 785 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF C.G. S.X.
0.09 1e-14 81 At4g39010 830056 AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.12 8e-7 56 At4g02290 828080 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.10 8e-7 56 At1g23210 838930 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.11 3e-6 54 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. C.G. S.X.
0.03 5e-5 50 At4g09740 826560 AtGH9B14 (Arabidopsis thaliana glycosyl hydrolase 9B14) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.03 2e-4 48 At3g43860 823499 AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.07 2e-4 48 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-8 61 Glycine max GmaAffx.62345.1.S1_at BQ630544 - - 6e-9 At1g71380 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig12839_at Contig12839 - - 2e+0 At1g59171 ATP binding / inositol pentakisphosphate 2-kinase C.G. S.X.
0.07 2e-5 52 Oryza sativa Os08g0114200 AK106851.1 - Endoglucanase 1 precursor (EC 3.2.1.4)(Endo-1,4-beta-glucanase) (Abscission cellulase 1) 6e-5 At1g23210 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) C.G. S.X.
0.15 2e-17 91 Populus trichocarpa Ptp.2360.1.S1_s_at AY660968.1 hypothetical protein - 2e-17 At1g22880 CEL5 (CELLULASE 5) C.G. S.X.
0.09 5e-5 50 Triticum aestivum Ta.9990.2.S1_at BQ609081 - - 2e-5 At1g71380 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1608025_at AW707961 hypothetical protein LOC100249311 - 2e-20 At3g54130 josephin family protein C.G. S.X.
0.04 5e-3 42 Zea mays Zm.10512.1.S1_at CA827014 - - 1e-2 At3g43860 AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00435 Cellulose degradation
00438 Xyloglucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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