CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g71190

Gene name SAG18 (SENESCENCE ASSOCIATED GENE 18)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. S.X. H.G.
0.64 78.9 At4g04860 825823 DER2.2 (DERLIN-2.2) F:unknown;P:proteolysis;C:cellular_component unknown;MOFP S.X. H.G.
0.63 78.1 At1g11020 837644 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV S.X. H.G.
0.60 75.7 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF S.X. H.G.
0.50 65.3 At4g32680 829403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.44 57.2 At4g26240 828730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.40 50.8 At5g16550 831517 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.38 46.7 At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF S.X. H.G.
0.35 41.6 At1g68070 843135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB S.X. H.G.
0.33 38.1 At1g54115 841851 CCX4 (CATION CALCIUM EXCHANGER 4) Involved in cation (Na and K) homeostasis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.8 99.2 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.3 99.1 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.4 99.0 GSM265424 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.2 99.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.2 99.0 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
7.4 98.8 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
7.3 98.8 E-MEXP-1443-raw-cel-1581869803
7.3 98.8 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
7.1 98.8 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
6.9 98.7 E-MEXP-1443-raw-cel-1581869745
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At5g53850 835466 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, metal ion binding;P:unknown;C:chloroplast stroma, chloroplast;BMFOPA C.G. S.X.
0.01 4e-1 36 At1g34420 840345 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA C.G. S.X.
0.02 2e+0 34 At4g04700 825805 CPK27 member of Calcium Dependent Protein Kinase C.G. S.X.
0.01 2e+0 34 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.01 2e+0 34 At3g47960 823951 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO C.G. S.X.
0.02 2e+0 34 At3g17800 821048 - mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-4 48 Glycine max Gma.2234.2.S1_at BE607788 - - 9e-5 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) C.G. S.X.
0.17 4e-12 71 Hordeum vulgare Contig9390_at Contig9390 - - 8e-7 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) C.G. S.X.
0.23 2e-17 91 Oryza sativa Os01g0962200 AK067659.1 - - 1e-17 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) C.G. S.X.
0.31 4e-39 163 Populus trichocarpa PtpAffx.200567.1.S1_at pmrna1120 hypothetical protein - 2e-39 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.109275.1.S1_at CA677633 - - 4e+0 At3g18760 ribosomal protein S6 family protein C.G. S.X.
0.22 2e-43 174 Vitis vinifera 1608659_s_at CF513313 hypothetical protein LOC100258355 - 7e-43 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) C.G. S.X.
0.03 1e+1 30 Zea mays Zm.9484.1.A1_at BM269244 - - 9e+0 At5g55330 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010149 A preprogrammed process associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of organelles, membranes and other cellular components. An example of this process is found in Arabidopsis thaliana, when older leaves or floral organs are shed.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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