CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g70895

Gene name CLE17 (CLAVATA3/ESR-RELATED 17)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g70895 843428 CLE17 (CLAVATA3/ESR-RELATED 17) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. S.X. H.G.
0.67 81.6 At3g07530 819942 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFAB S.X. H.G.
0.46 59.8 At2g45320 819140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PB S.X. H.G.
0.22 17.5 At1g28210 839715 ATJ1 DnaJ homolog AtJ1 (atj) S.X. H.G.
0.04 0.9 At5g62670 836388 AHA11 (Arabidopsis H(+)-ATPase 11) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
146.6 99.9 GSM133777 Lindsey_1-4_globular-basal_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
113.1 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.8 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
93.5 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
87.4 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.3 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.6 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
75.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 2e-10 65 At2g01505 814679 CLE16 (CLAVATA3/ESR-RELATED 16) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. C.G. S.X.
0.02 1e-5 50 At2g24130 816947 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 2e-3 42 At5g16020 831459 stress protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;BOAPF C.G. S.X.
0.04 2e-3 42 At4g00905 827986 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO C.G. S.X.
0.01 2e-3 42 At4g27430 828851 CIP7 (COP1-INTERACTING PROTEIN 7) Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. C.G. S.X.
0.05 2e-3 42 At2g04690 815012 cellular repressor of E1A-stimulated genes (CREG) family F:FMN binding;P:biological_process unknown;C:vacuole;MBOPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-3 42 Glycine max PsAffx.C82000047_at PsAffx.C82000047 - - 1e+0 At3g10920 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.05 1e-3 42 Hordeum vulgare Contig4338_s_at Contig4338 - - 3e-1 At3g52730 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein C.G. S.X.
0.07 1e-3 44 Oryza sativa Os10g0518000 9638.m03344 - Protein of unknown function DUF538 family protein 3e+0 At3g52520 unknown protein C.G. S.X.
0.06 3e-3 42 Populus trichocarpa Ptp.4184.1.S1_s_at DN498936 - - 1e+0 At3g53580 diaminopimelate epimerase family protein C.G. S.X.
0.07 2e-3 42 Triticum aestivum TaAffx.30520.1.S1_s_at CA624587 - - 2e-3 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.06 4e-2 36 Vitis vinifera 1617756_at CB981493 hypothetical protein LOC100253194 - 2e+1 At5g57560 TCH4 (Touch 4) C.G. S.X.
0.04 4e-3 40 Zea mays Zm.3019.1.A1_at CK368018 pollen-specific arabinogalacta protein BAN102 - 1e+0 At2g41905 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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