CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g70760

Gene name CRR23 ((chlororespiratory reduction 23)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At1g70760 843413 CRR23 ((chlororespiratory reduction 23) a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. S.X. H.G.
0.80 89.8 At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P S.X. H.G.
0.80 89.8 At3g16250 820871 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster. S.X. H.G.
0.57 73.8 At5g58260 835938 - Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. S.X. H.G.
0.55 70.6 At1g19150 838498 LHCA6 PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.4 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
11.0 99.2 GSM268009 Col-0, Time 0, rep-B GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
10.2 99.2 GSM268010 Col-0, Time 0, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
10.1 99.2 GSM260879 A2-Greco-WT GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
9.4 99.1 GSM151696 Col-0 uninoculated, biological replicate 3 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
9.4 99.1 GSM131464 AtGen_6-9512_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
8.6 99.0 GSM260878 A1-Greco-Bou GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
7.8 98.9 GSM133059 2507 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
7.7 98.9 GSM183506 WT_for_MYB29/76_rep3 GSE7570 ATR1_like_Clade_OE_and_miR
7.6 98.9 GSM134400 St.Clair_1-97_296_Tsu-1_0.02%-silwet_Rep1_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At5g62260 836347 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFVOB C.G. S.X.
0.04 3e-1 36 At1g72416 3767688 heat shock protein binding F:heat shock protein binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV C.G. S.X.
0.01 3e-1 36 At1g61640 842460 ABC1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBFMPAV C.G. S.X.
0.02 1e+0 34 At4g23320 828431 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.01 1e+0 34 At2g41790 818778 peptidase M16 family protein / insulinase family protein F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-13 77 Glycine max Gma.12514.1.S1_at CD396648 - - 1e-13 At1g70760 CRR23 ((chlororespiratory reduction 23) C.G. S.X.
0.05 1e-4 46 Hordeum vulgare Contig5950_s_at Contig5950 - - 4e-4 At1g70760 CRR23 ((chlororespiratory reduction 23) C.G. S.X.
0.11 1e-11 71 Oryza sativa Os05g0348100 CB645980 - Hypothetical protein 5e-8 At1g70760 CRR23 ((chlororespiratory reduction 23) C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.207158.1.S1_at pmrna14205 hypothetical protein - 2e-33 At1g22740 RABG3B C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.30436.1.S1_at CA625340 - - 1e+0 At1g70760 CRR23 ((chlororespiratory reduction 23) C.G. S.X.
0.21 2e-27 121 Vitis vinifera 1619067_at CB339465 hypothetical protein LOC100259429 - 8e-27 At1g70760 CRR23 ((chlororespiratory reduction 23) C.G. S.X.
0.08 5e-4 44 Zea mays Zm.8680.1.A1_at BM075162 hypothetical protein LOC100277231 - 1e-3 At1g70760 CRR23 ((chlororespiratory reduction 23) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009773 Electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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