CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g70420

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g70420 843378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.33 38.1 At2g38790 818461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.32 35.7 At1g73500 843685 MKK9 (MAP KINASE KINASE 9) member of MAP Kinase Kinase family. Autophosphorylates and also phosphorylates MPK3 and MPK6. Independently involved in ethylene and calmalexin biosynthesis. Induces transcription of ACS2, ACS6, ERF1, ERF2, ERF5, ERF6, CYP79B2, CYP79B3, CYP71A13 and PAD3. S.X. H.G.
0.23 19.3 At5g47220 834768 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. S.X. H.G.
0.22 17.5 At3g56710 824838 SIB1 (SIGMA FACTOR BINDING PROTEIN 1) Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts. S.X. H.G.
0.19 12.7 At2g36220 818194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.17 10.2 At1g76600 843993 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P S.X. H.G.
0.10 3.4 At1g69890 843325 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.10 3.4 At2g27310 817274 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
236.0 100.0 E-MEXP-807-raw-cel-1173273170
177.8 100.0 E-MEXP-807-raw-cel-1173273252
175.7 100.0 E-MEXP-807-raw-cel-1173273196
152.8 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
151.8 99.9 E-MEXP-807-raw-cel-1173273223
144.2 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
141.4 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
129.6 99.9 GSM131271 AtGen_6-1411_Cold(4Â°C)-Shoots-6.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
113.7 99.9 E-MEXP-807-raw-cel-1173273144
99.4 99.9 E-MEXP-807-raw-cel-1173272948
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 9e-30 131 At1g23710 838981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 7e-3 42 At5g20710 832194 BGAL7 (beta-galactosidase 7) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PMBFOA C.G. S.X.
0.02 7e-3 42 At4g27520 828861 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVA C.G. S.X.
0.01 1e-1 38 At5g67200 836855 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.01 1e-1 38 At4g38070 829963 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAV C.G. S.X.
0.01 1e-1 38 At4g38590 830016 glycosyl hydrolase family 35 protein putative beta-galactosidase (BGAL14 gene) C.G. S.X.
0.03 1e-1 38 At2g39320 818517 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 4e-1 36 At5g37150 833688 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFBOPAV C.G. S.X.
0.01 4e-1 36 At5g22800 832343 EMB1030 (EMBRYO DEFECTIVE 1030) F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding;P:embryonic development ending in seed dormancy, alanyl-tRNA aminoacylation;C:mitochondrion, chloroplast stroma, chloroplast, membrane;OBMAFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Glycine max GmaAffx.88518.1.S1_at BU082072 - - 2e+0 At5g11120 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig4646_at Contig4646 - - 1e-8 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.03 8e-1 36 Oryza sativa Os01g0917700 9629.m06846 - PAK-box/P21-Rho-binding domain containing protein 7e-2 At1g70190 ribosomal protein L12 family protein C.G. S.X.
0.06 1e-5 52 Populus trichocarpa PtpAffx.1225.1.S1_at CV238974 hypothetical protein - 1e-5 At1g70420 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.24111.1.S1_at CA724857 - - 2e-1 At3g58600 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618309_at CB968982 AP1-like protein - 6e+0 At2g02050 NADH-ubiquinone oxidoreductase B18 subunit, putative C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.21.1.A1_at AI600464 - - 3e+0 At5g05300 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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