Gene omics information

Query gene ID At1g70310
Gene name SPDS2 (spermidine synthase 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g70310843367SPDS2 (spermidine synthase 2)Spermidine synthase.S.X.H.G.
0.4761.2At4g33250829461EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)Encodes initiation factor 3k (EIF3k).S.X.H.G.
0.4457.2At1g09640837491elongation factor 1B-gamma, putative / eEF-1B gamma, putativeF:translation elongation factor activity;P:translational elongation;C:plasma membrane;BMOPFAS.X.H.G.
0.4355.3At1g10840837627TIF3H1Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).S.X.H.G.
0.4355.3At1g30230839903elongation factor 1-beta / EF-1-betaF:translation elongation factor activity;P:translational elongation, response to cadmium ion;C:plasma membrane, eukaryotic translation elongation factor 1 complex;MOFPS.X.H.G.
0.3846.7At3g13920820605EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)eukaryotic translation initiation factor 4A-1S.X.H.G.
0.3643.6At5g67220836857nitrogen regulation family proteinF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process;C:mitochondrion;BOMFPAS.X.H.G.
0.3643.6At3g58610825030ketol-acid reductoisomeraseF:coenzyme binding, oxidoreductase activity, binding, ketol-acid reductoisomerase activity, catalytic activity;P:response to cadmium ion, branched chain family amino acid biosynthetic process;C:in 6 components;BOFAPS.X.H.G.
0.3032.1At5g4152083415440S ribosomal protein S10 (RPS10B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast;MPBOFVS.X.H.G.
0.2930.3At2g4184081878440S ribosomal protein S2 (RPS2C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
131.599.9GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.999.2GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
10.699.2GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibition
10.099.2GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.699.1GSM133974Birnbaum_1-4_StageI-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
8.799.0GSM265427Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.499.0GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
8.399.0GSM252664Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep2GSE9996Organ regeneration in plants is independent of stem cell niche activity
8.198.9GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
8.098.9GSM252665Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.680771At1g23820838993SPDS1 (spermidine synthase 1)Spermidine synthase.C.G.S.X.
0.085e-446At5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.C.G.S.X.
0.025e-136At3g2023082156750S ribosomal protein L18 familyF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;BOPMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.472e-35151Glycine maxGma.2891.1.S1_atBI971321--3e-49At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.134e-652Hordeum vulgareContig4624_atContig4624--1e-5At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.203e-1067Oryza sativaOs07g0408700AK099606.1-Spermidine synthase 2 (EC 2.5.1.16) (Putrescineaminopropyltransferase 2) (SPDSY 2)2e-10At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.502e-56220Populus trichocarpaPtp.4460.1.S1_atCV253940hypothetical protein-2e-56At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.082e-344Triticum aestivumTaAffx.86092.1.S1_atCA616812--3e-10At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.476e-75280Vitis vinifera1619220_atCA816725hypothetical protein LOC100257112-3e-89At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.296e-1477Zea maysZm.16536.1.A1_a_atAY103592.1hypothetical protein LOC100272866 /// spermidine synthase 1-1e-17At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0008295The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00013Link to KaPPA-View 4Arginine and proline metabolism (Urea cycle and related metabolism)



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00270Link to KEGG PATHWAYCysteine and methionine metabolism
00330Link to KEGG PATHWAYArginine and proline metabolism
00410Link to KEGG PATHWAYbeta-Alanine metabolism
00480Link to KEGG PATHWAYGlutathione metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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