CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g70290

Gene name ATTPS8

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At1g70290 843365 ATTPS8 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. S.X. H.G.
0.67 81.6 At4g03510 825654 RMA1 RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. S.X. H.G.
0.63 78.1 At5g19120 832032 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF S.X. H.G.
0.53 68.6 At1g11260 837667 STP1 (SUGAR TRANSPORTER 1) Encodes a H+/hexose cotransporter. S.X. H.G.
0.53 68.6 At3g15450 820784 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PBOMF S.X. H.G.
0.31 33.8 At1g80920 844432 J8 J8 mRNA, nuclear gene encoding plastid protein, complete S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.5 99.8 E-ATMX-6-raw-cel-1308219121
39.5 99.8 E-ATMX-6-raw-cel-1308219150
22.6 99.6 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
21.7 99.6 GSM237294 Shoot Selenate rep1 GSE9311 Gene expression in roots and shoots of plants grown on selenate
20.6 99.6 E-ATMX-35-raw-cel-1574334928
19.1 99.6 GSM237293 Shoot control rep2 GSE9311 Gene expression in roots and shoots of plants grown on selenate
17.6 99.5 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
16.5 99.5 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
15.5 99.5 E-TABM-63-raw-cel-681137195
14.4 99.4 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 4e-173 609 At1g23870 838998 ATTPS9 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. C.G. S.X.
0.18 2e-36 155 At2g18700 816385 ATTPS11 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. C.G. S.X.
0.20 2e-36 155 At1g68020 843130 ATTPS6 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme. C.G. S.X.
0.32 7e-24 113 At1g60140 842309 ATTPS10 (trehalose phosphate synthase) Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. C.G. S.X.
0.13 6e-6 54 At1g06410 837152 ATTPS7 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. C.G. S.X.
0.14 9e-5 50 At4g17770 827498 ATTPS5 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. C.G. S.X.
0.01 1e-3 46 At2g22190 816753 catalytic/ trehalose-phosphatase F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA C.G. S.X.
0.01 5e-3 44 At4g12430 826855 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-3 46 Glycine max GmaAffx.34586.1.S1_at AW307453 - - 3e-4 At1g70290 ATTPS8 C.G. S.X.
0.12 7e-10 65 Hordeum vulgare Contig4657_at Contig4657 - - 3e-5 At1g23870 ATTPS9 C.G. S.X.
0.10 3e-15 85 Oryza sativa Os01g0730300 AK109542.1 - Glycosyl transferase, family 20 domain containingprotein 2e-15 At1g70290 ATTPS8 C.G. S.X.
0.21 6e-16 87 Populus trichocarpa PtpAffx.210555.1.S1_at pmrna20709 hypothetical protein - 4e-16 At1g23870 ATTPS9 C.G. S.X.
0.11 1e-6 56 Triticum aestivum Ta.30416.1.S1_at CK205280 - - 3e-4 At1g23870 ATTPS9 C.G. S.X.
0.05 2e-3 44 Vitis vinifera 1618726_at CB973545 hypothetical protein LOC100265140 - 2e-27 At1g06410 ATTPS7 C.G. S.X.
0.14 1e-7 57 Zea mays Zm.3961.1.S1_at CK370362 hypothetical protein LOC100272531 - 3e-7 At1g70290 ATTPS8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00099 Trehalose metabolism
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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