CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g70190

Gene name ribosomal protein L12 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At1g70190 843355 ribosomal protein L12 family protein F:structural constituent of ribosome;P:translation;C:mitochondrion, large ribosomal subunit;BOPMF S.X. H.G.
0.67 81.6 At4g39880 830147 ribosomal protein L23 family protein F:structural constituent of ribosome, nucleotide binding;P:translation, ribosome biogenesis;C:ribosome;BOPM S.X. H.G.
0.57 73.8 At2g17360 816243 40S ribosomal protein S4 (RPS4A) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, plasma membrane, chloroplast;MOAFP S.X. H.G.
0.57 73.8 At1g30580 839938 GTP binding F:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAP S.X. H.G.
0.56 73.0 At1g33120 840208 60S ribosomal protein L9 (RPL90B) F:structural constituent of ribosome;P:translation;C:in 7 components;MPAOBF S.X. H.G.
0.54 69.5 At5g39740 833970 60S ribosomal protein L5 (RPL5B) F:structural constituent of ribosome, 5S rRNA binding;P:translation, ribosome biogenesis;C:in 6 components;MAOFPB S.X. H.G.
0.51 66.3 At4g18730 827607 RPL16B encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin. S.X. H.G.
0.51 66.3 At5g02740 831811 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.45 58.3 At2g44120 819018 60S ribosomal protein L7 (RPL7C) F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 7 components;MOAFP S.X. H.G.
0.44 57.2 At3g51010 824265 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.4 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.0 99.3 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.8 99.3 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.3 99.3 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
11.0 99.2 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.8 99.2 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4 99.2 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.7 99.1 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.6 99.1 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.4 99.1 GSM173649 mARF10 rep2 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 5e-6 52 At4g37660 829920 ribosomal protein L12 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF C.G. S.X.
0.09 8e-5 48 At2g03130 814842 ribosomal protein L12 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF C.G. S.X.
0.07 2e-2 40 At4g36420 829794 ribosomal protein L12 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF C.G. S.X.
0.03 2e-2 40 At3g44090 823527 F-box family protein F:unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.03 8e-2 38 At4g36840 829837 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-2 38 At3g62590 825433 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFMB C.G. S.X.
0.01 3e-1 36 At3g05790 819748 LON4 (LON PROTEASE 4) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins. C.G. S.X.
0.01 3e-1 36 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.81762.1.S1_at BU578419 - - 1e+0 At1g70190 ribosomal protein L12 family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HW08K10u_s_at HW08K10u - - 5e-1 At3g04180 germin-like protein, putative C.G. S.X.
0.03 2e+0 34 Oryza sativa Os.14492.1.S1_at - - - 0 C.G. S.X.
0.26 8e-15 81 Populus trichocarpa PtpAffx.203008.1.S1_at pmrna5954 hypothetical protein - 6e-15 At1g70190 ribosomal protein L12 family protein C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.80382.1.S1_at CA697513 - - 4e+0 At3g55920 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative C.G. S.X.
0.06 4e-4 44 Vitis vinifera 1607562_at CB339916 hypothetical protein LOC100260435 - 7e-6 At4g37660 ribosomal protein L12 family protein C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.242.1.A1_at AI670254 - - 3e+0 At5g52720 metal ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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