Gene omics information

Query gene ID At1g70140
Gene name ATFH8 (formin 8)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3235.7At1g70140843350ATFH8 (formin 8)Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton.S.X.H.G.
0.4457.2At5g55090835600MAPKKK15member of MEKK subfamilyS.X.H.G.
0.2726.2At4g25390828642protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.2319.3At3g19240821458-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPMS.X.H.G.
0.2319.3At5g01830831850armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMFBVS.X.H.G.
0.2014.4At5g25930832662leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAS.X.H.G.
0.1912.7At4g36990829853HSF4 (HEAT SHOCK FACTOR 4)encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins.S.X.H.G.
0.157.8At4g24160828516hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMFPAS.X.H.G.
0.146.8At2g16900816192-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBAS.X.H.G.
0.135.8At2g36950818269heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
209.6100.0GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
153.299.9GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
139.899.9GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
125.399.9GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
99.799.9GSM184916Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
95.299.9GSM184899Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
84.799.9GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
71.299.9GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
70.499.9GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
67.699.9GSM184898Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.495e-49196At1g24150839028FH4 (FORMIN HOMOLOGUE 4)Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.C.G.S.X.
0.012e-552At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAC.G.S.X.
0.061e-346At1g59910842285formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVAC.G.S.X.
0.015e-344At4g23180828417CRK10 (CYSTEINE-RICH RLK10)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)C.G.S.X.
0.022e-242At4g19980827742unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.012e-242At3g55950824761CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3)F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.022e-242At3g23830821966GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.C.G.S.X.
0.017e-240At3g51710824334curculin-like (mannose-binding) lectin family protein / PAN domain-containing proteinF:sugar binding;P:biological_process unknown;C:endomembrane system;PBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-242Glycine maxGmaAffx.4466.2.S1_atCA938953--9e-8At5g28500unknown proteinC.G.S.X.
0.021e-138Hordeum vulgareContig15752_s_atContig15752--5e+0At1g61340F-box family proteinC.G.S.X.
0.029e-344Oryza sativaOsAffx.32046.1.S1_x_at---0C.G.S.X.
0.061e-450Populus trichocarpaPtpAffx.208386.1.S1_atpmrna16679hypothetical protein-8e-5At1g70140ATFH8 (formin 8)C.G.S.X.
0.021e-346Triticum aestivumTa.23791.3.S1_x_atCA705850--6e-2At2g25700ASK3 (ARABIDOPSIS SKP1-LIKE 3)C.G.S.X.
0.012e-240Vitis vinifera1618403_atCF517333--2e-1At3g62880ATOEP16-4C.G.S.X.
0.015e-136Zea maysZm.1356.3.A1_atAY109343.1--7e-3At3g09390MT2A (METALLOTHIONEIN 2A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009932Growth that occurs specifically at the tip of a cell.
XGO:0045010The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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