CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g70090

Gene name LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.40 50.8 At2g42580 818858 TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling. S.X. H.G.
0.34 39.8 At1g61100 842403 disease resistance protein (TIR class), putative F:unknown;P:defense response;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.29 30.3 At5g18500 831968 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.28 30.3 At3g11700 820342 FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) F:molecular_function unknown;P:response to cyclopentenone, cell adhesion;C:vacuole;BPOM S.X. H.G.
0.28 30.3 At1g20090 838598 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening. S.X. H.G.
0.27 26.2 At2g27810 817328 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV S.X. H.G.
0.26 24.4 At1g01540 839533 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.26 24.4 At1g09160 837436 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:plasma membrane;PMOFBVA S.X. H.G.
0.26 24.4 At3g23750 821957 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.6 99.7 E-MEXP-98-raw-cel-320188804
22.7 99.6 E-MEXP-98-raw-cel-320189079
19.5 99.6 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
17.1 99.5 GSM142882 CW001_ATH1_A1.1-WestC-wsu GSE6178 Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
16.3 99.5 E-MEXP-98-raw-cel-320188859
14.9 99.4 GSM142778 AM002_ATH1_A3-MCCOR-GFA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
14.8 99.4 GSM62688 Columbia flowers_stage 1-14_IAA GSE2847 Auxin induction in wild type and arf6 arf8 flowers
14.4 99.4 E-MEXP-98-raw-cel-320189024
14.1 99.4 GSM131489 ATGE_100_A GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
14.0 99.4 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 0 728 At1g24170 839030 LGT9 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.29 2e-16 87 At3g28340 822462 GATL10 (Galacturonosyltransferase-like 10) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.11 1e-14 81 At3g50760 824240 GATL2 (Galacturonosyltransferase-like 2) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.16 7e-10 65 At1g13250 837885 GATL3 (Galacturonosyltransferase-like 3) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.06 3e-9 63 At1g19300 838512 PARVUS (PARVUS) The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls. C.G. S.X.
0.10 1e-8 61 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 9e-13 75 Glycine max GmaAffx.86863.2.S1_at BQ610828 - - 3e-13 At1g70090 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig7990_at Contig7990 - - 1e+0 At4g38060 unknown protein C.G. S.X.
0.04 5e-3 44 Oryza sativa Os07g0646800 AK071716.1 - Avr9/Cf-9 rapidly elicited protein 231 1e-2 At3g50760 GATL2 (Galacturonosyltransferase-like 2) C.G. S.X.
0.24 5e-5 50 Populus trichocarpa PtpAffx.208384.1.S1_at pmrna16676 glycosyltransferase, CAZy family GT8 - 3e-8 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.05 6e-1 36 Triticum aestivum TaAffx.12563.1.A1_at BJ254471 - - 1e-3 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.03 2e-7 56 Vitis vinifera 1616007_at CB002013 hypothetical protein LOC100264254 - 3e-15 At1g19300 PARVUS (PARVUS) C.G. S.X.
0.03 6e-2 38 Zea mays Zm.1452.1.A1_at CA403441 hypothetical protein LOC100191570 - 9e-3 At3g50760 GATL2 (Galacturonosyltransferase-like 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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