Gene omics information

Query gene ID At1g69610
Gene name structural constituent of ribosome
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At1g69610843297structural constituent of ribosomeF:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFBS.X.H.G.
0.5065.3At3g03470821250CYP89A9member of CYP89AS.X.H.G.
0.5065.3At5g22860832349serine carboxypeptidase S28 family proteinF:serine-type peptidase activity, peptidase activity;P:proteolysis;C:endomembrane system;MOFPBS.X.H.G.
0.2930.3At1g31820840072amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPAS.X.H.G.
0.1811.4At3g44880823622ACD1 (ACCELERATED CELL DEATH 1)Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
101.799.9GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
90.099.9GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
82.099.9GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
75.899.9GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
71.499.9GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
68.299.9GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
59.899.8GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
54.599.8GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
48.299.8GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
45.899.8GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-346At5g03040831696iqd2 (IQ-domain 2)F:calmodulin binding;P:biological_process unknown;C:plasma membrane;PMOFC.G.S.X.
0.011e-242At5g60120836134TOE2F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBVC.G.S.X.
0.011e-242At4g38600830017KAK (KAKTUS)encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.C.G.S.X.
0.011e-242At4g39753830132kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVFC.G.S.X.
0.011e-242At2g22430816775ATHB6Encodes a homeodomain leucine zipper class I (HD-Zip I) protein that is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis.C.G.S.X.
0.011e-242At2g15320816021leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;PMOBFAC.G.S.X.
0.016e-240At5g14990831351-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVC.G.S.X.
0.016e-240At5g11230830993organic anion transmembrane transporterF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBAC.G.S.X.
0.016e-240At4g34540829605isoflavone reductase family proteinencodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-242Glycine maxGmaAffx.86989.1.A1_atBI970551--6e-2At2g42040-C.G.S.X.
0.028e-342Hordeum vulgareContig25984_atContig25984--9e-1At4g24380unknown proteinC.G.S.X.
0.028e-344Oryza sativaOs09g02719009637.m00751--7e-2At5g04280glycine-rich RNA-binding proteinC.G.S.X.
0.023e-138Populus trichocarpaPtpAffx.63140.2.S1_s_atDN500684hypothetical protein-7e-11At1g43130LCV2 (LIKE COV 2)C.G.S.X.
0.022e-242Triticum aestivumTaAffx.31101.1.S1_atCA619504--1e+1At1g51960IQD27 (IQ-domain 27)C.G.S.X.
0.025e-342Vitis vinifera1609529_atCF372558--4e-1At4g35900FDC.G.S.X.
0.023e-240Zea maysZm.3153.3.S1_a_atCF624577B12D protein-1e-3At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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