CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g69526

Gene name UbiE/COQ5 methyltransferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At1g69526 843287 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:unknown;C:chloroplast;PBO S.X. H.G.
0.65 79.6 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. S.X. H.G.
0.62 77.3 At2g16230 816120 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO S.X. H.G.
0.60 75.7 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV S.X. H.G.
0.55 70.6 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.51 66.3 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM S.X. H.G.
0.50 65.3 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO S.X. H.G.
0.50 65.3 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.50 65.3 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.48 62.5 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
258.5 100.0 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
205.4 100.0 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
196.9 100.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
179.2 100.0 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
170.3 100.0 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
110.9 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
101.1 99.9 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
84.7 99.9 GSM252664 Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
81.3 99.9 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
80.2 99.9 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 4e-4 46 At1g69520 843285 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOAFMP C.G. S.X.
0.02 3e-1 36 At3g04070 819562 anac047 (Arabidopsis NAC domain containing protein 47) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.02 3e-1 36 At1g63940 842697 monodehydroascorbate reductase, putative F:ATP binding;P:response to cadmium ion, response to cold;C:mitochondrion, stromule, chloroplast stroma, chloroplast;BOMFAP C.G. S.X.
0.02 1e+0 34 At5g53950 835478 CUC2 (CUP-SHAPED COTYLEDON 2) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max GmaAffx.11803.1.A1_at BM143803 - - 2e-1 At1g69526 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig24229_at Contig24229 - - 3e-1 At1g69526 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.03 1e-2 42 Oryza sativa Os02g0744100 AK061274.1 - SAM (and some other nucleotide) binding motifdomain containing protein 9e-3 At1g69526 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.220053.1.S1_at pmrna36328 hypothetical protein - 6e-1 At1g69526 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.14543.3.S1_x_at CK207545 - - 5e+0 At5g40690 - C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1622241_x_at CF205868.1 - - 4e-1 At2g22155 - C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.754.1.A1_at AI745921 - - 2e-1 At1g33960 AIG1 (AVRRPT2-INDUCED GENE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage