Gene omics information

Query gene ID At1g69400
Gene name transducin family protein / WD-40 repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At1g69400843272transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPAS.X.H.G.
0.4659.8At5g05940830479ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.S.X.H.G.
0.4050.8At4g14970827156unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBS.X.H.G.
0.3338.1At3g10880820258unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.157.8At3g17360820999POK1 (PHRAGMOPLAST ORIENTING KINESIN 1)PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
247.6100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
205.3100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.8100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
188.0100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
177.6100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
177.3100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
165.6100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
165.6100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
158.099.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
149.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-138At5g44390834465FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMAC.G.S.X.
0.015e-136At5g35390833500leucine-rich repeat transmembrane protein kinase, putativeEncodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis.C.G.S.X.
0.035e-136At1g72750843607ATTIM23-2F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport;C:mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex, membrane;MFPOC.G.S.X.
0.025e-136At1g64295842735F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.022e+034At5g20450832167-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAVC.G.S.X.
0.012e+034At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBC.G.S.X.
0.012e+034At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Glycine maxGmaAffx.657.1.A1_atBU548986--8e-5At5g03900-C.G.S.X.
0.034e+032Hordeum vulgareHVSMEm0008I05r2_atHVSMEm0008I05r2--1e-1At2g28190CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)C.G.S.X.
0.034e+034Oryza sativaOs.54489.1.S1_at---0C.G.S.X.
0.091e-552Populus trichocarpaPtpAffx.150555.1.S1_atBI138088hypothetical protein-4e-6At1g69400transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.038e+032Triticum aestivumTaAffx.83103.1.S1_s_atCA662020--2e-1At5g13500unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1620842_atCB345023--2e+0At3g15351unknown proteinC.G.S.X.
0.033e+032Zea maysZm.2785.1.A1_atCF004244major Facilitator superfamily protein-2e-11At4g27720-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage