CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g69360

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g69360 843268 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF S.X. H.G.
0.52 67.4 At5g18830 832001 SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7) Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c. S.X. H.G.
0.50 65.3 At5g12350 831110 Ran GTPase binding / chromatin binding / zinc ion binding F:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:plasma membrane;MOBPFAV S.X. H.G.
0.44 57.2 At5g08500 830749 transmembrane CLPTM1 family protein F:unknown;P:biological_process unknown;C:unknown;MOFP S.X. H.G.
0.31 33.8 At5g12260 831101 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFB S.X. H.G.
0.29 30.3 At5g12290 831104 DGS1 (DGD1 SUPPRESSOR 1) Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background. S.X. H.G.
0.29 30.3 At5g13310 831172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFP S.X. H.G.
0.15 7.8 At1g50030 841427 TOR (TARGET OF RAPAMYCIN) Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. S.X. H.G.
0.13 5.8 At1g08620 837384 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO S.X. H.G.
0.11 4.1 At5g07940 830688 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
154.0 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
133.9 99.9 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
122.7 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
114.7 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
101.4 99.9 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
90.7 99.9 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
84.4 99.9 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
66.2 99.8 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
48.6 99.8 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
43.5 99.8 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 1e-31 139 At1g26620 839202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB C.G. S.X.
0.01 3e-1 38 At5g37800 833758 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFB C.G. S.X.
0.01 1e+0 36 At5g03040 831696 iqd2 (IQ-domain 2) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;PMOF C.G. S.X.
0.01 1e+0 36 At5g41150 834117 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins C.G. S.X.
0.01 1e+0 36 At4g24490 828551 protein prenyltransferase F:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAV C.G. S.X.
0.01 1e+0 36 At4g18830 827617 OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5) Member of the ovate protein family.Interacts with BLH1 and KNAT3. Regulates the subcellular localization of BLH1. C.G. S.X.
0.01 1e+0 36 At4g21190 827867 emb1417 (embryo defective 1417) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POMB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-4 50 Glycine max Gma.5222.1.A1_at BI970218 - - 1e-5 At1g69360 unknown protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare Contig9876_at Contig9876 - - 1e+0 At5g12240 unknown protein C.G. S.X.
0.01 7e-1 38 Oryza sativa OsAffx.14385.1.S1_at - - - 0 C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.209133.1.S1_at pmrna18077 hypothetical protein - 1e-1 At1g13940 unknown protein C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.29201.1.S1_at CA648220 - - 4e+0 At3g60540 sec61beta family protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1620240_at BM437669 - - 3e-1 At2g36295 unknown protein C.G. S.X.
0.01 6e-1 36 Zea mays Zm.6086.2.A1_a_at AI920680 hypothetical protein LOC100193851 - 2e+1 At5g03740 HD2C (HISTONE DEACETYLASE 2C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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