Gene omics information

Query gene ID At1g69295
Gene name PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At1g69295843261PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.S.X.H.G.
0.4355.3At1g69800843316CBS domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPAFS.X.H.G.
0.3846.7At5g52420835318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PS.X.H.G.
0.1811.4At4g27780828891ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)Encodes acyl-CoA-binding protein with ankyrin repeatsS.X.H.G.
0.020.4At4g31590829286ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)encodes a gene similar to cellulose synthaseS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
96.199.9GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
59.399.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
44.199.8GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
36.699.7GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
35.499.7GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
34.299.7GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
33.399.7GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
33.399.7GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
31.599.7GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
30.699.7GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.301e-28127At1g26450839186beta-1,3-glucanase-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVAC.G.S.X.
0.072e-859At5g08000830694E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.C.G.S.X.
0.045e-342At5g61130836234PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1)Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.C.G.S.X.
0.023e-136At5g65590836685Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:chloroplast;POFC.G.S.X.
0.013e-136At2g32240817784-F:molecular_function unknown;P:response to cadmium ion;C:plasma membrane;MOBFPAVC.G.S.X.
0.021e+034At5g60220836144TET4 (TETRASPANIN4)Member of TETRASPANIN familyC.G.S.X.
0.021e+034At4g36530829805hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.073e-550Glycine maxGmaAffx.92887.1.S1_s_atCF808612--2e-5At1g69295PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)C.G.S.X.
0.036e-134Hordeum vulgareHV10E20u_atHV10E20u--2e-2At1g47970unknown proteinC.G.S.X.
0.044e-240Oryza sativaOs.18885.1.S1_at---0C.G.S.X.
0.035e-136Populus trichocarpaPtpAffx.9585.1.S1_atDN497325--1e+1At5g40970unknown proteinC.G.S.X.
0.031e+034Triticum aestivumTa.5888.2.S1_x_atBJ291459--8e-1At1g69295PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)C.G.S.X.
0.042e+032Vitis vinifera1616555_s_atCB343780--1e+1At4g35165unknown proteinC.G.S.X.
0.046e-134Zea maysZm.3662.1.S1_atAY108718.1--2e-1At1g22990heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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