CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g69260

Gene name AFP1 (ABI FIVE BINDING PROTEIN)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g69260 843257 AFP1 (ABI FIVE BINDING PROTEIN) F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF S.X. H.G.
0.89 94.6 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV S.X. H.G.
0.86 93.1 At5g57050 835809 ABI2 (ABA INSENSITIVE 2) Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. S.X. H.G.
0.75 86.9 At2g41190 818718 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV S.X. H.G.
0.73 85.5 At3g61890 825362 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
219.9 100.0 E-MEXP-475-raw-cel-680982449
153.8 99.9 E-MEXP-475-raw-cel-680982521
113.8 99.9 E-MEXP-475-raw-cel-680982503
112.3 99.9 E-MEXP-475-raw-cel-680982485
105.8 99.9 GSM184633 Arabidopsis, whole roots, 140 mM NaCl, replicate 2 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
89.1 99.9 E-MEXP-475-raw-cel-680982377
87.0 99.9 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
80.6 99.9 GSM184915 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
75.8 99.9 GSM184632 Arabidopsis, whole roots, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
67.9 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 9e-9 61 At3g29575 822619 AFP3 (ABI FIVE BINDING PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.20 6e-7 56 At1g13740 837934 AFP2 (ABI FIVE BINDING PROTEIN 2) Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent. C.G. S.X.
0.02 3e-2 40 At4g31800 829308 WRKY18 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. C.G. S.X.
0.03 3e-2 40 At3g61900 825363 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO C.G. S.X.
0.01 1e-1 38 At5g22640 832327 emb1211 (embryo defective 1211) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max Gma.17925.1.S1_at BM270546 - - 2e-2 At3g29575 AFP3 (ABI FIVE BINDING PROTEIN 3) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HVSMEa0011H12r2_x_at HVSMEa0011H12r2 - - 3e-2 At5g35680 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative C.G. S.X.
0.02 3e-1 38 Oryza sativa OsAffx.14922.1.S1_at - - - 0 C.G. S.X.
0.15 3e-9 63 Populus trichocarpa PtpAffx.9026.2.A1_a_at CV243100 hypothetical protein - 2e-9 At1g69260 AFP1 (ABI FIVE BINDING PROTEIN) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.128541.24.S1_at CA648417 - - 4e+0 At1g31520 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1613441_s_at CB973258 hypothetical protein LOC100250052 - 2e-5 At5g56540 AGP14 (ARABINOGALACTAN PROTEIN 14) C.G. S.X.
0.02 9e-1 34 Zea mays Zm.11587.1.A1_at BM379162 - - 3e-1 At1g62760 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009738 A series of molecular signals mediated by the detection of abscisic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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