Gene omics information

Query gene ID At1g68980
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g68980843231pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMS.X.H.G.
0.3948.4At2g44630819071kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOAFS.X.H.G.
0.3745.0At2g37160818292transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPAS.X.H.G.
0.3745.0At5g48990834958kelch repeat-containing F-box family proteinencodes an F-box protein that interacts with SKP1 and likely to be involved in ubiquitin-mediated protein degradation.S.X.H.G.
0.3439.8At3g52260824391pseudouridine synthase family proteinF:pseudouridine synthase activity, RNA binding;P:pseudouridine synthesis;C:cellular_component unknown;BOMFPAS.X.H.G.
0.3133.8At1g73440843678calmodulin-relatedF:calcium ion binding;P:biological_process unknown;C:chloroplast;PMOFBS.X.H.G.
0.3133.8At4g31200829247SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinF:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVAS.X.H.G.
0.3032.1At4g38180829974FRS5 (FAR1-related sequence 5)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFAOMS.X.H.G.
0.3032.1At2g30800817631HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.S.X.H.G.
0.2930.3At1g64960842804bindingF:binding;P:unknown;C:mitochondrion;MOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
326.4100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
113.599.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.699.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
103.199.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.799.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
92.199.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
87.599.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.199.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
82.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
78.499.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7601358At1g69290843260pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POFMC.G.S.X.
0.016e-240At5g18620831980CHR17 (CHROMATIN REMODELING FACTOR17)F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVAC.G.S.X.
0.016e-240At1g05490837051chr31 (chromatin remodeling 31)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOBFPVAC.G.S.X.
0.016e-240At1g51380841562eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.022e-138At5g06910830582ATJ6 (Arabidopsis J-domain protein 6)DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.C.G.S.X.
0.022e-138At2g326456241414unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e-138At1g50570841478C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFBOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.106e-1583Glycine maxGmaAffx.80839.1.S1_atBE440318--2e-14At1g69290pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.027e+032Hordeum vulgareEBro01_SQ001_M06_atEBro01_SQ001_M06--8e-1At5g20885zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.022e+036Oryza sativaOsAffx.6536.1.S1_at---0C.G.S.X.
0.201e-1379Populus trichocarpaPtpAffx.207895.1.S1_atpmrna15674hypothetical protein-4e-37At1g69290pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.021e+036Triticum aestivumTaAffx.110626.1.S1_atCA656896--1e-3At4g08570heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.027e-238Vitis vinifera1617073_atCF517100hypothetical protein LOC100246896-3e-1At2g0125060S ribosomal protein L7 (RPL7B)C.G.S.X.
0.032e+034Zea maysZm.8466.1.S1_atBQ538688macrophage migration inhibitory factor-4e-11At5g01650macrophage migration inhibitory factor family protein / MIF family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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