CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68810

Gene name basic helix-loop-helix (bHLH) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At1g68810 843213 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB S.X. H.G.
0.67 81.6 At3g48185 823974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At4g32880 829424 ATHB-8 (HOMEOBOX GENE 8) member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems. S.X. H.G.
0.40 50.8 At2g04850 815031 auxin-responsive protein-related F:unknown;P:unknown;C:membrane;PMFOB S.X. H.G.
0.17 10.2 At2g38320 818412 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
356.3 100.0 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
250.0 100.0 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
228.1 100.0 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
198.9 100.0 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
151.8 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
150.0 99.9 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
137.8 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
112.4 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
54.8 99.8 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
54.6 99.8 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 1e-14 81 At3g25710 822159 BHLH32 (BASIC HELIX-LOOP-HELIX 32) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.01 4e-2 40 At5g46830 834727 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.02 4e-2 40 At3g09770 820135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;MPOFVBA C.G. S.X.
0.02 1e-1 38 At5g53870 835468 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA C.G. S.X.
0.03 1e-1 38 At5g43250 834343 NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.02 1e-1 38 At5g40610 834060 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA C.G. S.X.
0.01 1e-1 38 At3g04440 819599 unknown protein F:unknown;P:biological_process unknown;C:unknown;PFOM C.G. S.X.
0.01 1e-1 38 At3g03700 821183 unknown protein F:unknown;P:biological_process unknown;C:unknown;PFOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max GmaAffx.23899.1.S1_at BM891498 - - 5e-2 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig23928_at Contig23928 - - 2e-2 At5g28630 glycine-rich protein C.G. S.X.
0.03 2e-2 42 Oryza sativa OsAffx.5823.1.S1_at - - - 0 C.G. S.X.
0.22 2e-10 67 Populus trichocarpa PtpAffx.208977.1.S1_at pmrna17790 hypothetical protein - 2e-10 At1g68810 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.78140.1.S1_at CA737007 - - 2e+0 At2g26020 PDF1.2b (plant defensin 1.2b) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1613651_at CB348803 hypothetical protein LOC100266045 - 1e-3 At5g07050 - C.G. S.X.
0.03 2e-1 36 Zea mays Zm.17490.1.A1_a_at BG840791 helix-loop-helix DNA-binding domain containing protein - 2e-8 At2g43140 DNA binding / transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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