CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68640

Gene name PAN (PERIANTHIA)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At1g68640 843194 PAN (PERIANTHIA) Encodes bZIP-transcription factor. Mutant plants have extra floral organs. S.X. H.G.
0.71 84.2 At2g07696 815372 ribosomal protein S7 family protein F:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAF S.X. H.G.
0.71 84.2 At2g20710 816599 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POFMB S.X. H.G.
0.67 81.6 At3g49710 824133 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.67 81.6 At5g44150 834438 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBO S.X. H.G.
0.59 74.7 At1g55460 841993 Kin17 DNA-binding protein-related F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBVA S.X. H.G.
0.57 73.8 At3g21430 821697 - - S.X. H.G.
0.28 30.3 At1g31760 840063 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFMV S.X. H.G.
0.28 30.3 At2g20480 816568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
399.6 100.0 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
217.7 100.0 GSM133777 Lindsey_1-4_globular-basal_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
134.8 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
78.6 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.6 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
63.5 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
62.9 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.9 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.4 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 3e-12 73 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM C.G. S.X.
0.10 5e-11 69 At5g06960 830587 OBF5 (OCS-ELEMENT BINDING FACTOR 5) Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-6 56 Glycine max Gma.7757.1.S1_at BG510691 transcription factor bZIP95 - 1e-14 At5g06950 AHBP-1B C.G. S.X.
0.16 4e-10 65 Hordeum vulgare Contig5907_at Contig5907 - - 3e-9 At5g06960 OBF5 (OCS-ELEMENT BINDING FACTOR 5) C.G. S.X.
0.16 1e-6 56 Oryza sativa Os01g0279900 AB051296.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 6e-11 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) C.G. S.X.
0.33 6e-33 143 Populus trichocarpa PtpAffx.208006.1.S1_at pmrna15888 hypothetical protein - 4e-33 At1g68640 PAN (PERIANTHIA) C.G. S.X.
0.17 5e-8 59 Triticum aestivum Ta.23670.1.S1_at CA705573 transcription factor HBP-1b(c1) - 5e-8 At1g68640 PAN (PERIANTHIA) C.G. S.X.
0.03 3e-6 52 Vitis vinifera 1608352_at CB978000 similar to TGA-type basic leucine zipper protein TGA2.1 - 1e-19 At5g06960 OBF5 (OCS-ELEMENT BINDING FACTOR 5) C.G. S.X.
0.15 5e-12 71 Zea mays Zm.19119.1.A1_at CO521073 hypothetical protein LOC100274089 - 1e-11 At1g68640 PAN (PERIANTHIA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009909 Any process that modulates the frequency, rate or extent of flower development.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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