CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68630

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At1g68630 843193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM S.X. H.G.
0.67 81.6 At1g05630 837069 5PTASE13 Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated increase in cytosolic calcium ion. S.X. H.G.
0.44 57.2 At1g78980 844238 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.40 50.8 At4g02900 828143 early-responsive to dehydration protein-related / ERD protein-related F:unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOB S.X. H.G.
0.21 15.8 At2g23660 816897 LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) F:unknown;P:biological_process unknown;C:unknown;PMBOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
219.1 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
185.8 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
167.9 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
141.9 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
115.3 99.9 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
84.1 99.9 E-MEXP-509-raw-cel-829148561
74.7 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.8 99.8 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
65.6 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.6 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e+0 32 At2g25880 817129 AtAUR2 (AtAurora2) Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. C.G. S.X.
0.02 8e+0 30 At5g50850 835157 MAB1 (MACCI-BOU) F:pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity;P:defense response to bacterium;C:mitochondrion, nucleolus, plasma membrane;BOMPFA C.G. S.X.
0.02 8e+0 30 At5g41690 834172 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOBA C.G. S.X.
0.02 8e+0 30 At5g46600 834703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOF C.G. S.X.
0.03 8e+0 30 At5g10460 830910 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;OBMAFP C.G. S.X.
0.02 8e+0 30 At4g19420 827683 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBA C.G. S.X.
0.03 8e+0 30 At4g32830 829419 AtAUR1 (ATAURORA1) Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis. C.G. S.X.
0.02 8e+0 30 At4g15960 827279 catalytic/ epoxide hydrolase F:epoxide hydrolase activity, catalytic activity;P:biological_process unknown;C:mitochondrion;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-1 34 Glycine max Gma.7731.2.S1_at CA783548 - - 3e-19 At1g14440 AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31) C.G. S.X.
0.05 4e+0 30 Hordeum vulgare S0000200012H06F1_at S0000200012H06F1 - - 4e-2 At4g15620 integral membrane family protein C.G. S.X.
0.05 1e+0 34 Oryza sativa Os02g0763000 AU068794 - Uncharacterized Cys-rich domain containing protein 2e+0 At1g68630 unknown protein C.G. S.X.
0.06 3e+0 32 Populus trichocarpa PtpAffx.208962.1.S1_at pmrna17766 hypothetical protein - 2e-1 At1g68610 unknown protein C.G. S.X.
0.07 4e-2 38 Triticum aestivum Ta.7737.2.S1_at CA611289 - - 7e-2 At1g68630 unknown protein C.G. S.X.
0.06 6e-1 32 Vitis vinifera 1609020_at CB343738 hypothetical protein LOC100256086 - 5e+0 At3g18460 unknown protein C.G. S.X.
0.04 4e+0 30 Zea mays ZmAffx.1188.1.A1_at BE025244 - - 3e+0 At5g46620 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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