CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68600

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO S.X. H.G.
0.25 22.6 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO S.X. H.G.
0.22 17.5 At5g52320 835308 CYP96A4 member of CYP96A S.X. H.G.
0.13 5.8 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. S.X. H.G.
0.11 4.1 At2g32160 817775 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP S.X. H.G.
0.11 4.1 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. S.X. H.G.
0.08 2.3 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
48.4 99.8 GSM133044 2786 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
46.4 99.8 GSM133043 2785 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
45.8 99.8 GSM133049 2792 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
45.1 99.8 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
41.3 99.8 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
41.1 99.8 GSM133046 2788 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
40.6 99.8 E-TABM-209-raw-cel-1316546535
39.5 99.8 E-ATMX-6-raw-cel-1308219150
38.5 99.8 GSM269812 WT leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
36.4 99.7 E-ATMX-32-raw-cel-1562974527
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 0 753 At2g17470 816253 unknown protein F:unknown;P:biological_process unknown;C:unknown;BPOF C.G. S.X.
0.68 2e-149 529 At1g25480 839134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOF C.G. S.X.
0.14 1e-24 115 At3g18440 821373 AtALMT9 (aluminum-activated malate transporter 9) Belongs to the aluminum-activated malate transporter family. Encodes a vacuolar malate channel. Expressed in all parts of plants. Almost exclusively expressed in mesophyll cells of leaves. C.G. S.X.
0.07 2e-7 57 At1g18420 838423 - F:unknown;P:unknown;C:unknown;PBOFM C.G. S.X.
0.01 1e-2 42 At2g44430 819050 DNA-binding bromodomain-containing protein F:DNA binding;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.01 2e-1 38 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF C.G. S.X.
0.02 8e-1 36 At5g38620 833852 MADS-box protein (AGL73) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF C.G. S.X.
0.01 8e-1 36 At5g13020 831142 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.01 8e-1 36 At5g04680 830346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-20 101 Glycine max GmaAffx.7919.1.S1_at BE475132 - - 4e-15 At1g25480 unknown protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig13343_at Contig13343 - - 2e-2 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) C.G. S.X.
0.06 7e-6 54 Oryza sativa Os06g0268800 AK120796.1 - Protein of unknown function UPF0005 family protein 1e-6 At3g18440 AtALMT9 (aluminum-activated malate transporter 9) C.G. S.X.
0.28 4e-37 157 Populus trichocarpa PtpAffx.208008.1.S1_at pmrna15891 hypothetical protein - 8e-35 At1g68600 unknown protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.65594.1.S1_at BJ236677 - - 1e+0 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1621639_s_at CF514133 hypothetical protein LOC100262060 - 7e-3 At5g39760 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.629.1.A1_at AI715057 - - 8e-1 At3g13437 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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