CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68530

Gene name KCS6 (3-KETOACYL-COA SYNTHASE 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g68530 843182 KCS6 (3-KETOACYL-COA SYNTHASE 6) Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.86 93.1 At1g07720 837286 KCS3 (3-KETOACYL-COA SYNTHASE 3) Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.86 93.1 At4g00360 828019 CYP86A2 (CYTOCHROME P450 86 A2) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. S.X. H.G.
0.46 59.8 At1g51500 841575 CER5 (ECERIFERUM 5) Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones. S.X. H.G.
0.29 30.3 At4g25960 828702 PGP2 (P-GLYCOPROTEIN 2) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.2 99.7 E-MEXP-1443-raw-cel-1581869515
25.0 99.6 GSM131204 AtGen_D-38_3-AL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
23.4 99.6 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
23.2 99.6 E-MEXP-1443-raw-cel-1581869573
22.7 99.6 GSM131191 AtGen_D-24_2-WL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
22.5 99.6 GSM131203 AtGen_D-37_3-BL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
22.1 99.6 GSM131206 AtGen_D-40_3-WL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
22.0 99.6 GSM131175 AtGen_D-7_1-UL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
21.6 99.6 GSM131174 AtGen_D-6_1-AL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
21.4 99.6 GSM131190 AtGen_D-23_2-UL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 755 At1g25450 839131 KCS5 (3-KETOACYL-COA SYNTHASE 5) Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.03 8e-7 56 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. C.G. S.X.
0.03 3e-6 54 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.04 1e-5 52 At4g34510 829602 KCS17 (3-KETOACYL-COA SYNTHASE 17) Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.03 5e-5 50 At2g15090 815998 KCS8 (3-KETOACYL-COA SYNTHASE 8) Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.07 8e-4 46 At2g26250 817165 KCS10 (3-KETOACYL-COA SYNTHASE 10) epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. C.G. S.X.
0.04 5e-2 40 At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.04 5e-2 40 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 1e-37 159 Glycine max Gma.7832.1.S1_s_at CD392810 - - 1e-37 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.13 7e-12 71 Hordeum vulgare Contig6409_at Contig6409 - - 1e-11 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.18 2e-12 75 Oryza sativa Os03g0220100 AK104714.1 - Very-long-chain fatty acid condensing enzyme CUT1(Very-long-chain fatty acid condensing enzyme (CUT1)56079-54227) 1e-12 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.38 1e-34 149 Populus trichocarpa PtpAffx.224655.1.S1_at pmrna43407 hypothetical protein - 8e-26 At1g25450 KCS5 (3-KETOACYL-COA SYNTHASE 5) C.G. S.X.
0.09 1e-5 52 Triticum aestivum Ta.14341.1.S1_at AL820835 - - 1e-5 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1619011_at CF208055 hypothetical protein LOC100247295 - 7e-8 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) C.G. S.X.
0.06 3e-1 36 Zea mays Zm.13586.1.S1_at AY107833.1 3-ketoacyl-CoA synthase - 6e-1 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
X GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
X GO:0010025 The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids.
X GO:0000038 The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater.
X GO:0042335 The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00040 Fatty acid elongation and wax biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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