CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68450

Gene name VQ motif-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.39 48.4 At1g68450 843174 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.56 73.0 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA S.X. H.G.
0.49 63.5 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.47 61.2 At4g31875 829317 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.46 59.8 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.45 58.3 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.43 55.3 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.42 53.9 At2g42060 818806 CHP-rich zinc finger protein, putative F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PM S.X. H.G.
0.40 50.8 At1g30110 839890 ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25) F:bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:diadenosine tetraphosphate catabolic process;C:cellular_component unknown;BOPMA S.X. H.G.
0.40 50.8 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
85.3 99.9 E-MEXP-828-raw-cel-1156922905
59.9 99.8 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
56.1 99.8 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
53.9 99.8 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
51.9 99.8 E-MEXP-828-raw-cel-1156922923
51.5 99.8 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
48.9 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
43.6 99.8 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
42.0 99.8 E-MEXP-828-raw-cel-1156922809
42.0 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 36 At4g25110 828614 AtMC2 (metacaspase 2) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA C.G. S.X.
0.01 9e-1 34 At4g14510 827098 RNA binding F:RNA binding;P:biological_process unknown;C:chloroplast;POMFBVA C.G. S.X.
0.02 9e-1 34 At4g26080 828714 ABI1 (ABA INSENSITIVE 1) Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure. C.G. S.X.
0.05 9e-1 34 At3g09390 820098 MT2A (METALLOTHIONEIN 2A) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage C.G. S.X.
0.03 4e+0 32 At5g45870 834627 Bet v I allergen family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e+0 32 At5g20860 832209 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 4e+0 32 At4g34280 829578 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MOFBPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Glycine max PsAffx.psHA004iB11r_s_at PsAffx.psHA004iB11r - - 4e+0 At1g68450 VQ motif-containing protein C.G. S.X.
0.02 2e+0 32 Hordeum vulgare Contig6523_at Contig6523 - - 1e-1 At1g29840 esterase/lipase/thioesterase family protein C.G. S.X.
0.03 7e+0 32 Oryza sativa OsAffx.2489.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.47176.1.S1_s_at DN499317 - - 3e-2 At1g02840 SR1 C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.9091.1.S1_x_at CA612783 - - 3e+0 At3g52040 unknown protein C.G. S.X.
0.03 2e+1 28 Vitis vinifera 1622717_s_at CF606082 - - 2e-1 At5g65590 Dof-type zinc finger domain-containing protein C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.743.1.A1_at AI745735 - - 8e-1 At4g28170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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