Gene omics information

Query gene ID At1g68370
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g68370843166ARG1 (ALTERED RESPONSE TO GRAVITY 1)DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins.S.X.H.G.
0.4862.5At4g34660829618SH3 domain-containing protein 2 (SH3P2)F:clathrin binding;P:biological_process unknown;C:unknown;MOPFBS.X.H.G.
0.4355.3At4g36480829800ATLCB1 (LONG-CHAIN BASE1)Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.S.X.H.G.
0.4253.9At3g05090819671transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAVS.X.H.G.
0.3948.4At3g16270820873-F:unknown;P:intracellular protein transport;C:membrane;MOPBFS.X.H.G.
0.3846.7At5g49830835046-F:unknown;P:unknown;C:plasma membrane;MFPOVS.X.H.G.
0.3745.0At4g10570826649UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9)encodes a ubiquitin-specific protease family member, UBP9.S.X.H.G.
0.3643.6At5g06140830501SNX1 (SORTING NEXIN 1)Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.S.X.H.G.
0.3643.6At2g14835815972zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOS.X.H.G.
0.3643.6At3g22170821781FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.399.4GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
8.198.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
7.398.8GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.064e-550At1g24120839024ARL1 (ARG1-LIKE 1)encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined.C.G.S.X.
0.022e-138At4g18975827633pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.016e-136At5g53640835445F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.026e-136At4g28920829013unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.036e-136At3g62600825434ATERDJ3BJ domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.122e-448Glycine maxGmaAffx.73721.1.S1_atBU550998--9e-38At1g24120ARL1 (ARG1-LIKE 1)C.G.S.X.
0.467e-36151Hordeum vulgareContig11164_atContig11164--1e-45At1g68370ARG1 (ALTERED RESPONSE TO GRAVITY 1)C.G.S.X.
0.409e-48192Oryza sativaOs.14751.1.S1_at---0C.G.S.X.
0.526e-150531Populus trichocarpaPtpAffx.208938.1.S1_s_atpmrna17713hypothetical protein-9e-158At1g68370ARG1 (ALTERED RESPONSE TO GRAVITY 1)C.G.S.X.
0.339e-28125Triticum aestivumTa.5366.1.S1_atBJ217165--8e-38At1g68370ARG1 (ALTERED RESPONSE TO GRAVITY 1)C.G.S.X.
0.131e-39163Vitis vinifera1607209_atCB972845hypothetical protein LOC100252578-5e-29At1g68370ARG1 (ALTERED RESPONSE TO GRAVITY 1)C.G.S.X.
0.372e-42173Zea maysZm.5659.1.A1_atCF623486chaperone protein dnaJ 15-6e-42At1g68370ARG1 (ALTERED RESPONSE TO GRAVITY 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009638The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.
XGO:0009958The orientation of plant parts towards gravity.
CGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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