CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68370

Gene name ARG1 (ALTERED RESPONSE TO GRAVITY 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g68370 843166 ARG1 (ALTERED RESPONSE TO GRAVITY 1) DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins. S.X. H.G.
0.48 62.5 At4g34660 829618 SH3 domain-containing protein 2 (SH3P2) F:clathrin binding;P:biological_process unknown;C:unknown;MOPFB S.X. H.G.
0.43 55.3 At4g36480 829800 ATLCB1 (LONG-CHAIN BASE1) Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion. S.X. H.G.
0.42 53.9 At3g05090 819671 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV S.X. H.G.
0.39 48.4 At3g16270 820873 - F:unknown;P:intracellular protein transport;C:membrane;MOPBF S.X. H.G.
0.38 46.7 At5g49830 835046 - F:unknown;P:unknown;C:plasma membrane;MFPOV S.X. H.G.
0.37 45.0 At4g10570 826649 UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) encodes a ubiquitin-specific protease family member, UBP9. S.X. H.G.
0.36 43.6 At5g06140 830501 SNX1 (SORTING NEXIN 1) Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1. S.X. H.G.
0.36 43.6 At2g14835 815972 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPO S.X. H.G.
0.36 43.6 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.4 99.4 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.3 99.4 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.1 99.4 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.1 99.1 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.6 99.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.1 98.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
7.7 98.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
7.6 98.9 E-MEXP-739-raw-cel-1099467393
7.3 98.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
7.2 98.8 E-MEXP-739-raw-cel-1099467384
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 4e-5 50 At1g24120 839024 ARL1 (ARG1-LIKE 1) encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined. C.G. S.X.
0.02 2e-1 38 At4g18975 827633 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 6e-1 36 At5g53640 835445 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 6e-1 36 At4g28920 829013 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 6e-1 36 At3g62600 825434 ATERDJ3B J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-4 48 Glycine max GmaAffx.73721.1.S1_at BU550998 - - 9e-38 At1g24120 ARL1 (ARG1-LIKE 1) C.G. S.X.
0.46 7e-36 151 Hordeum vulgare Contig11164_at Contig11164 - - 1e-45 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) C.G. S.X.
0.40 9e-48 192 Oryza sativa Os.14751.1.S1_at - - - 0 C.G. S.X.
0.52 6e-150 531 Populus trichocarpa PtpAffx.208938.1.S1_s_at pmrna17713 hypothetical protein - 9e-158 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) C.G. S.X.
0.33 9e-28 125 Triticum aestivum Ta.5366.1.S1_at BJ217165 - - 8e-38 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) C.G. S.X.
0.13 1e-39 163 Vitis vinifera 1607209_at CB972845 hypothetical protein LOC100252578 - 5e-29 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) C.G. S.X.
0.37 2e-42 173 Zea mays Zm.5659.1.A1_at CF623486 chaperone protein dnaJ 15 - 6e-42 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009638 The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.
X GO:0009958 The orientation of plant parts towards gravity.
C GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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