CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g68290

Gene name ENDO 2 (endonuclease 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At1g68290 843158 ENDO 2 (endonuclease 2) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. S.X. H.G.
0.39 48.4 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA S.X. H.G.
0.36 43.6 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.36 43.6 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.36 43.6 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.27 26.2 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV S.X. H.G.
0.20 14.4 At2g02990 814828 RNS1 (RIBONUCLEASE 1) member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid. S.X. H.G.
0.19 12.7 At2g46880 819301 PAP14 (PURPLE ACID PHOSPHATASE 14) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO S.X. H.G.
0.18 11.4 At1g45100 841077 polyadenylate-binding protein, putative / PABP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB S.X. H.G.
0.17 10.2 At2g16450 816143 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
488.6 100.0 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
199.4 100.0 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
194.3 100.0 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
132.8 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
131.0 99.9 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
128.7 99.9 E-MEXP-1797-raw-cel-1669767967
115.6 99.9 E-MEXP-1797-raw-cel-1669768084
112.0 99.9 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
110.4 99.9 E-ATMX-31-raw-cel-1516947882
110.2 99.9 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-2 40 At4g21590 828245 ENDO3 (endonuclease 3) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development. C.G. S.X.
0.03 1e-1 38 At1g11190 837660 BFN1 (BIFUNCTIONAL NUCLEASE I) Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops). C.G. S.X.
0.02 4e-1 36 At5g63870 836507 PP7 (SERINE/THREONINE PHOSPHATASE 7) Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling. C.G. S.X.
0.01 4e-1 36 At5g03070 831675 IMPA-9 (IMPORTIN ALPHA ISOFORM 9) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.01 4e-1 36 At3g25960 822193 pyruvate kinase, putative F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max Gma.3617.1.S1_at BE659297 endonuclease - 4e-2 At4g21590 ENDO3 (endonuclease 3) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare EBes01_SQ002_J08_at EBes01_SQ002_J08 - - 2e-1 At1g68290 ENDO 2 (endonuclease 2) C.G. S.X.
0.02 8e-1 36 Oryza sativa Os03g0352500 AK062300.1 - Hypothetical protein 6e-1 At5g40570 surfeit locus protein 2 family protein / SURF2 family protein C.G. S.X.
0.18 1e-20 101 Populus trichocarpa PtpAffx.63072.1.A1_at CV255630 hypothetical protein - 7e-21 At1g68290 ENDO 2 (endonuclease 2) C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.15576.1.S1_at CA485581 - - 1e+0 At2g31550 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.09 3e-8 57 Vitis vinifera 1617940_at CA809342 hypothetical protein LOC100266396 - 7e-8 At1g68290 ENDO 2 (endonuclease 2) C.G. S.X.
0.02 1e+1 30 Zea mays Zm.5467.1.A1_at BE639735 hypothetical protein LOC100273978 - 8e-14 At4g02060 PRL (PROLIFERA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006308 The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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