Gene omics information

Query gene ID At1g67810
Gene name SUFE2 (SULFUR E 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g67810843107SUFE2 (SULFUR E 2)Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.S.X.H.G.
0.7788.0At1g15350838104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.7284.8At3g48780824039SPT1 (SERINE PALMITOYLTRANSFERASE 1)Encodes one of the two LCB2 subunits (LCB2a and LCB2b) of serine palmitoyltransferase, an enzyme involved in sphingolipid biosynthesis. LCB2a and LCB2b are functional redundant. Double mutants are gametophytic lethal.S.X.H.G.
0.7083.5At5g53360835417seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:endomembrane system, nucleus;MPOS.X.H.G.
0.6882.2At4g25900828696aldose 1-epimerase family proteinF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;BOPFMS.X.H.G.
0.6781.6At4g20380827786zinc finger protein (LSD1)LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challengeS.X.H.G.
0.6680.1At2g19450816464TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1)Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development.S.X.H.G.
0.6579.6At1g67480843069kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOVFAS.X.H.G.
0.6478.9At4g20890827837TUB9tubulin 9S.X.H.G.
0.6478.9At1g06700837180serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
75.399.9E-MEXP-807-raw-cel-1173272921
56.899.8GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
54.899.8E-MEXP-1468-raw-cel-1591138787
50.299.8GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
41.199.8GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
37.899.8GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
37.299.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
36.199.7E-MEXP-807-raw-cel-1173273032
34.999.7GSM322550genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
29.699.7GSM134459St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-138At4g238952745723pleckstrin homology (PH) domain-containing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e-138At1g61520842446LHCA3PSI type III chlorophyll a/b-binding protein (Lhca3*1)C.G.S.X.
0.011e-138At1g26730839214EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOBC.G.S.X.
0.022e+034At5g66660836798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POC.G.S.X.
0.012e+034At3g19170821451ATPREP1 (PRESEQUENCE PROTEASE 1)Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowersC.G.S.X.
0.012e+034At2g13690815853PRLI-interacting factor, putativeF:transcription regulator activity;P:biological_process unknown;C:unknown;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-136Glycine maxGmaAffx.34646.2.S1_atAW350118--1e+0At5g65880unknown proteinC.G.S.X.
0.027e-134Hordeum vulgareContig14212_atContig14212--3e-4At3g20790oxidoreductase family proteinC.G.S.X.
0.023e+034Oryza sativaOsAffx.15036.1.S1_at---0C.G.S.X.
0.045e-136Populus trichocarpaPtpAffx.223049.1.S1_x_atpmrna40841hypothetical protein-9e-2At1g67810SUFE2 (SULFUR E 2)C.G.S.X.
0.032e+034Triticum aestivumTa.28029.1.A1_atCA606930--3e-1At1g63206-C.G.S.X.
0.033e-238Vitis vinifera1609424_atCD798745hypothetical protein LOC100263956-7e-30At3g13670protein kinase family proteinC.G.S.X.
0.033e+032Zea maysZmAffx.602.1.A1_atAI715030--8e-1At1g30670basic helix-loop-helix (bHLH) family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0051176Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur.
SGO:0016226The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage