CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g67810

Gene name SUFE2 (SULFUR E 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g67810 843107 SUFE2 (SULFUR E 2) Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis. S.X. H.G.
0.77 88.0 At1g15350 838104 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.72 84.8 At3g48780 824039 SPT1 (SERINE PALMITOYLTRANSFERASE 1) Encodes one of the two LCB2 subunits (LCB2a and LCB2b) of serine palmitoyltransferase, an enzyme involved in sphingolipid biosynthesis. LCB2a and LCB2b are functional redundant. Double mutants are gametophytic lethal. S.X. H.G.
0.70 83.5 At5g53360 835417 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:endomembrane system, nucleus;MPO S.X. H.G.
0.68 82.2 At4g25900 828696 aldose 1-epimerase family protein F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;BOPFM S.X. H.G.
0.67 81.6 At4g20380 827786 zinc finger protein (LSD1) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge S.X. H.G.
0.66 80.1 At2g19450 816464 TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1) Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development. S.X. H.G.
0.65 79.6 At1g67480 843069 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOVFA S.X. H.G.
0.64 78.9 At4g20890 827837 TUB9 tubulin 9 S.X. H.G.
0.64 78.9 At1g06700 837180 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.3 99.9 E-MEXP-807-raw-cel-1173272921
56.8 99.8 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
54.8 99.8 E-MEXP-1468-raw-cel-1591138787
50.2 99.8 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
41.1 99.8 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
37.8 99.8 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
37.2 99.7 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
36.1 99.7 E-MEXP-807-raw-cel-1173273032
34.9 99.7 GSM322550 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
29.6 99.7 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-1 38 At4g23895 2745723 pleckstrin homology (PH) domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At1g61520 842446 LHCA3 PSI type III chlorophyll a/b-binding protein (Lhca3*1) C.G. S.X.
0.01 1e-1 38 At1g26730 839214 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOB C.G. S.X.
0.02 2e+0 34 At5g66660 836798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.01 2e+0 34 At3g19170 821451 ATPREP1 (PRESEQUENCE PROTEASE 1) Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers C.G. S.X.
0.01 2e+0 34 At2g13690 815853 PRLI-interacting factor, putative F:transcription regulator activity;P:biological_process unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max GmaAffx.34646.2.S1_at AW350118 - - 1e+0 At5g65880 unknown protein C.G. S.X.
0.02 7e-1 34 Hordeum vulgare Contig14212_at Contig14212 - - 3e-4 At3g20790 oxidoreductase family protein C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.15036.1.S1_at - - - 0 C.G. S.X.
0.04 5e-1 36 Populus trichocarpa PtpAffx.223049.1.S1_x_at pmrna40841 hypothetical protein - 9e-2 At1g67810 SUFE2 (SULFUR E 2) C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.28029.1.A1_at CA606930 - - 3e-1 At1g63206 - C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1609424_at CD798745 hypothetical protein LOC100263956 - 7e-30 At3g13670 protein kinase family protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.602.1.A1_at AI715030 - - 8e-1 At1g30670 basic helix-loop-helix (bHLH) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0051176 Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur.
S GO:0016226 The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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