Gene omics information

Query gene ID At1g67750
Gene name pectate lyase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g67750843100pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOS.X.H.G.
0.4659.8At5g07030830594aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, plant-type cell wall;PMFOS.X.H.G.
0.3338.1At5g22740832337ATCSLA02encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed proteinS.X.H.G.
0.2217.5At5g66560836788phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PFBMOS.X.H.G.
0.2014.4At3g21190821672unknown proteinF:unknown;P:unknown;C:Golgi apparatus;PS.X.H.G.
0.1912.7At1g04680839452pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOS.X.H.G.
0.1811.4At5g55730835667FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1)fasciclin-like arabinogalactan-protein 1 (Fla1)S.X.H.G.
0.1811.4At5g65700836699BAM1 (BARELY ANY MERISTEM 1)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.S.X.H.G.
0.103.4At2g05790815130glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOS.X.H.G.
0.061.4At1g13280837888AOC4 (ALLENE OXIDE CYCLASE 4)Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
175.7100.0E-MEXP-265-raw-cel-414617890
150.799.9E-MEXP-265-raw-cel-414617695
146.099.9GSM218596Whole roots 3.5hr KNO3 treated then frozen, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
132.199.9E-MEXP-265-raw-cel-414617783
116.299.9GSM218595Whole roots 3.5hr KNO3 treated then frozen, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
104.999.9GSM142661MB002_ATH1_A1-Eland-ch1GSE6153Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
86.699.9GSM142662MB002_ATH1_A2-Eland-ch2GSE6153Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
58.799.8GSM184560Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
57.199.8GSM184561Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
51.599.8GSM218593Whole roots 3.5hr KCl control treated then frozen, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.362e-47190At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOC.G.S.X.
0.414e-45182At5g63180836439pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFOC.G.S.X.
0.276e-32139At3g07010819886pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.414e-30133At4g24780828580pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOC.G.S.X.
0.131e-29131At3g24230822010pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.181e-29131At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.295e-26119At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOC.G.S.X.
0.178e-25115At4g13210826936lyase/ pectate lyaseF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;PBFOC.G.S.X.
0.165e-2099At4g13710827005pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.292e-41171Glycine maxGmaAffx.13717.1.S1_atBI316021--2e-63At5g63180pectate lyase family proteinC.G.S.X.
0.141e-654Hordeum vulgareContig11004_atContig11004--3e-22At3g07010pectate lyase family proteinC.G.S.X.
0.154e-1687Oryza sativaOs04g0137100AK060609.1-Pectate lyase (Fragment)8e-6At3g07010pectate lyase family proteinC.G.S.X.
0.272e-48194Populus trichocarpaPtpAffx.208266.1.S1_s_atpmrna16449hypothetical protein-9e-25At3g27400pectate lyase family proteinC.G.S.X.
0.042e-138Triticum aestivumTaAffx.50373.1.S1_atCA741910--7e-2At1g67750pectate lyase family proteinC.G.S.X.
0.303e-40165Vitis vinifera1607945_atAF243475.1pectate lyase-1e-39At1g67750pectate lyase family proteinC.G.S.X.
0.097e-238Zea maysZmAffx.854.1.S1_atAI770665hypothetical protein LOC100273705-5e-8At4g24780pectate lyase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00421Link to KaPPA-View 4Polysaccharide lyases



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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